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. 2016 Oct 24;9(1):20–31. doi: 10.1093/gbe/evw256

Table 1.

PCR Sanger Sequencing Results vs. lobSTR Results for Selected STRs

UMD3.1 PCR (bp)
lobSTR (bp)
No STR Chr Begin End Motif (bp) Animal A1 A2 A1 A2 Call Coverage Q score
1 BM1818 23 39,294,224 39,294,249 GT 37 Blackstar 33 37 33 33 P 4 0.69
2 Elevation 35 37 37 37 P 10 2.39
3 Ivanhoe 33 37 37 37 P 2 0.30
4 Chairman 33 37 33 37 Y 30 0.00
5 BM1824 1 132,498,006 132,498,034 CA 29 Blackstar 29 35 33 35 P 4 2.35
6 Elevation 29 35 27 35 P 10 2.39
7 BM2113 2 127,591,877 127,591,917 AC 42 Elevation 26 48 28 38 N 14 5.52
8 Blackstar 28 36 28 40 P 6 3.88
9 ETH10 5 56,657,954 56,657,996 CA 41 Elevation 39 43 37 43 P 6 4.09
10 ETH152 5 114,885,382 114,885,416 TG 37 Blackstar 33 35 35 35 P 14 4.17
11 Elevation 33 35 35 35 P 6 1.79
12 ETH225 9 10,858,165 10,858,199 CA 34 Elevation 32 34 30 32 N 8 0.69
13 Blackstar 26 38 38 38 P 2 0.25
14 ETH3 19 56648417 56648461 AC 46 Blackstar 42 52 44 52 P 6 6.00
15 HAUT27 26 29,127,336 29,127,370 GT 39 Elevation 29 41 31 31 N 2 0.37
16 ILSTS006 7 96,709,240 96,709,279 TG 43 Elevation 39 43 35 41 N 6 4.12
17 Blackstar 39 43 43 43 P 2 0.37
18 INRA023 3 33,011,005 33,011,044 CA 43 Chairman 31 37 31 31 P 28 3.62
19 Blackstar 31 35 31 35 Y 6 2.82
20 Elevation 35 39 35 39 Y 6 2.87
21 Ivanhole 31 39 31 39 Y 18 4.06
22 INRA037 10 76,365,534 76,365,555 TG 32 Blackstar 31 38 31 31 P 8 1.94
23 INRA063 18 40,699,867 40,699,892 GT 35 Blackstar 27 27 27 27 Y 4 0.80
24 STR_chr8 8 38,693,251 38,693,297 ACT 46 Blackstar 39 39 39 39 Y 4 3.11
25 Elevation 39 39 39 39 Y 14 3.74
26 STR_chr7 7 2,965,462 2,965,506 ATCC 44 Blackstar 44 44 44 44 Y 4 1.23
27 Elevation 44 48 44 48 Y 14 5.70
28 STR_chr10 10 37,414,396 37,414,434 ATCC 38 Blackstar 38 38 38 38 Y 2 0.70
29 Elevation 38 38 38 38 Y 10 3.01
30 STR_chr16 16 81,503,345 81,503,411 ATCC 66 Blackstar 30 66 30 66 Y 4 big
31 Elevation 30 30 30 30 Y 14 4.21
32 STR_chr19 19 46,403,668 46,403,701 ATCC 33 Blackstar 33 37 33 37 Y 12 big
33 Elevation 33 33 33 33 Y 10 3.01
34 STR_chr24 24 34,465,896 34,465,926 AGAT 30 Blackstar 30 30 30 30 Y 2 0.70
35 Elevation 26 26 30 30 N 8 2.41

Note.—Y: Both platforms agree. P: lobSTR reported only one allele out of two. N: lobSTR reported an allele that does not exist.