Table 1.
UMD3.1 | PCR (bp) |
lobSTR (bp) |
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
No | STR | Chr | Begin | End | Motif | (bp) | Animal | A1 | A2 | A1 | A2 | Call | Coverage | Q score |
1 | BM1818 | 23 | 39,294,224 | 39,294,249 | GT | 37 | Blackstar | 33 | 37 | 33 | 33 | P | 4 | 0.69 |
2 | Elevation | 35 | 37 | 37 | 37 | P | 10 | 2.39 | ||||||
3 | Ivanhoe | 33 | 37 | 37 | 37 | P | 2 | 0.30 | ||||||
4 | Chairman | 33 | 37 | 33 | 37 | Y | 30 | 0.00 | ||||||
5 | BM1824 | 1 | 132,498,006 | 132,498,034 | CA | 29 | Blackstar | 29 | 35 | 33 | 35 | P | 4 | 2.35 |
6 | Elevation | 29 | 35 | 27 | 35 | P | 10 | 2.39 | ||||||
7 | BM2113 | 2 | 127,591,877 | 127,591,917 | AC | 42 | Elevation | 26 | 48 | 28 | 38 | N | 14 | 5.52 |
8 | Blackstar | 28 | 36 | 28 | 40 | P | 6 | 3.88 | ||||||
9 | ETH10 | 5 | 56,657,954 | 56,657,996 | CA | 41 | Elevation | 39 | 43 | 37 | 43 | P | 6 | 4.09 |
10 | ETH152 | 5 | 114,885,382 | 114,885,416 | TG | 37 | Blackstar | 33 | 35 | 35 | 35 | P | 14 | 4.17 |
11 | Elevation | 33 | 35 | 35 | 35 | P | 6 | 1.79 | ||||||
12 | ETH225 | 9 | 10,858,165 | 10,858,199 | CA | 34 | Elevation | 32 | 34 | 30 | 32 | N | 8 | 0.69 |
13 | Blackstar | 26 | 38 | 38 | 38 | P | 2 | 0.25 | ||||||
14 | ETH3 | 19 | 56648417 | 56648461 | AC | 46 | Blackstar | 42 | 52 | 44 | 52 | P | 6 | 6.00 |
15 | HAUT27 | 26 | 29,127,336 | 29,127,370 | GT | 39 | Elevation | 29 | 41 | 31 | 31 | N | 2 | 0.37 |
16 | ILSTS006 | 7 | 96,709,240 | 96,709,279 | TG | 43 | Elevation | 39 | 43 | 35 | 41 | N | 6 | 4.12 |
17 | Blackstar | 39 | 43 | 43 | 43 | P | 2 | 0.37 | ||||||
18 | INRA023 | 3 | 33,011,005 | 33,011,044 | CA | 43 | Chairman | 31 | 37 | 31 | 31 | P | 28 | 3.62 |
19 | Blackstar | 31 | 35 | 31 | 35 | Y | 6 | 2.82 | ||||||
20 | Elevation | 35 | 39 | 35 | 39 | Y | 6 | 2.87 | ||||||
21 | Ivanhole | 31 | 39 | 31 | 39 | Y | 18 | 4.06 | ||||||
22 | INRA037 | 10 | 76,365,534 | 76,365,555 | TG | 32 | Blackstar | 31 | 38 | 31 | 31 | P | 8 | 1.94 |
23 | INRA063 | 18 | 40,699,867 | 40,699,892 | GT | 35 | Blackstar | 27 | 27 | 27 | 27 | Y | 4 | 0.80 |
24 | STR_chr8 | 8 | 38,693,251 | 38,693,297 | ACT | 46 | Blackstar | 39 | 39 | 39 | 39 | Y | 4 | 3.11 |
25 | Elevation | 39 | 39 | 39 | 39 | Y | 14 | 3.74 | ||||||
26 | STR_chr7 | 7 | 2,965,462 | 2,965,506 | ATCC | 44 | Blackstar | 44 | 44 | 44 | 44 | Y | 4 | 1.23 |
27 | Elevation | 44 | 48 | 44 | 48 | Y | 14 | 5.70 | ||||||
28 | STR_chr10 | 10 | 37,414,396 | 37,414,434 | ATCC | 38 | Blackstar | 38 | 38 | 38 | 38 | Y | 2 | 0.70 |
29 | Elevation | 38 | 38 | 38 | 38 | Y | 10 | 3.01 | ||||||
30 | STR_chr16 | 16 | 81,503,345 | 81,503,411 | ATCC | 66 | Blackstar | 30 | 66 | 30 | 66 | Y | 4 | big |
31 | Elevation | 30 | 30 | 30 | 30 | Y | 14 | 4.21 | ||||||
32 | STR_chr19 | 19 | 46,403,668 | 46,403,701 | ATCC | 33 | Blackstar | 33 | 37 | 33 | 37 | Y | 12 | big |
33 | Elevation | 33 | 33 | 33 | 33 | Y | 10 | 3.01 | ||||||
34 | STR_chr24 | 24 | 34,465,896 | 34,465,926 | AGAT | 30 | Blackstar | 30 | 30 | 30 | 30 | Y | 2 | 0.70 |
35 | Elevation | 26 | 26 | 30 | 30 | N | 8 | 2.41 |
Note.—Y: Both platforms agree. P: lobSTR reported only one allele out of two. N: lobSTR reported an allele that does not exist.