. 2016 Nov 9;9(1):48–63. doi: 10.1093/gbe/evw267

Table 2.

A/T%, non-synonymous to synonymous mutation (dN/dS) ratio and individual dN and dS values for genes encoded on the Florideophyceae mitochondrion genomes

Gene	AT Content (%)	dN/dS ratio	dN	dS	Species with pseudogene only
atp4	79.8	0.51645	022882	0.44307
atp6	72.5	0.12864	0.07486	0.58195
atp8	78.8	0.51248	0.20110	0.39241
atp9	66.1	0.01550	0.00212	0.13673
cob	70.3	0.11691	0.05443	0.46555
cox1^a	67.2	0.06936	0.01711	0.24675
cox2	69.5	0.14959	0.04549	0.30414
cox3	68.3	0.12819	0.07186	0.56058
nad1	69.0	0.09454	0.06667	0.70520
nad2	74.6	0.31481	0.15877	0.50434
nad3^b	74.5	0.15718	0.07060	0.44919
nad4	72.7	0.18548	0.07790	0.41999
nad4L	75.3	0.14619	0.05654	0.38677
nad5	71.9	0.21716	0.08547	0.39356
nad6	75.1	0.26439	0.17651	0.66762
rpl16	75.9	0.36193	0.13664	0.37752
rpl20	79.1	0.62160	0.46012	0.74023	Ce. japonicum
					Ce. sungminbooi
					C. polysiphoniae
					Co. compressa
					D. binghamiae^d
					G. elegans
					G. vagum
					H. rubra
					V. lanosa
rps3^c	76.9	0.51571	0.28532	0.55326
rps11	77.3	0.45177	0.19375	0.42886	Sp. durum
rps12	67.5	0.20794	0.11986	0.57642
sdhB	71.7	0.20603	0.10707	0.51969
sdhC	78.6	0.47084	0.17487	0.37140
sdhD	78.2	0.46556	0.26263	0.56412
TatC	80.0	0.50046	0.34550	0.69037	Ce. japonicum

Note.—Species with a pseudogene, rather than a functional copy of the gene, are listed in the far right column and were left out of calculations of A/T% and dN/dS ratio.

^aIntrons removed and CDSs only were used for A/T% and dN/dS analysis.

^bCe. japonicum nad3 left out of dN/dS analysis.

^cD. binghamiae rps3 left out of dN/dS analysis.

^dNo evidence for remnant pseudogene, appears to be a complete loss.