Table 3.

Potential Infection-Related Putative Gene Models in the Phytophthora megakarya and Phytophthora palmivora Genomes

Gene Family	P. megakarya			P. palmivora			Core Orthologa			P. sojae	P. ramorum
	Total	TSb	TS-SPc	Total	TSb	TS-SPc	Total	TSb
								Pmeg	Ppal
Proteases, all	500	306	76	644	532	106	233	226	224	282	311
Serine proteases	177	105	28	196	167	37	78	76	76	119	127
Metalloproteases	62	42	7	91	75	12	32	71	71	71	86
Cysteine proteases	78	40	11	73	62	21	28	27	27	67	74
Aspartic protease	49	5	1	37	7	3	3	3	3	13	14
Glycosyl Hydrolases	322	261	105	508	458	128	195	192	193	190	173
Chitinases	7	7	4	2	2	2	1	1	1	5	2
Cutinases	9	5	5	7	6	1	1	1	1	16	4
Glucanase inhibitor	16	9	8	5	5	4	4	4	4	NK	NK
Pectinases, all	67	43	31	100	72	52	36	33	35	NK	NK
Pectin (methyl)-esterase	17	9	8	21	14	14	7	7	7	19	15
Polygalacturonase	22	15	12	34	31	20	13	12	13	NK	NK
Pectate lyase	21	15	12	27	19	19	12	12	12	43	41
Lipases	53	38	16	105	93	311	30	28	30	171	154
ABC super-family	462	297	27	913	440	63	161	157	158	134	135
PDR	62	45	7	113	89	8	35	34	35	45	46
MRP	55	26	2	85	60	9	24	24	24	23	22
Phytotoxic peptides
NPP	109	31	22	75	48	36	27	15	24	29	40
PcF	6	0	0	3	2	2	0	0	0	19	4
Protease inhibitor, all	60	31	17	57	47	34	22	20	21	22	19
Kazal	30	14	6	23	19	13	7	6	6	15	12
PAMPs
Elicitins	50	40	33	54	53	45	26	23	26	57	48
Transglutaminase	14	9	7	43	28	16	10	10	10	NK	NK
Effectors
CRN	152	51	4	137	61	4	30	19	22	40	8
RxLR	1,181	336	336	991	415	414	106	43	56	395	350

Note.—NK, not known.

^aCore orthologous genes shared by Ppal and Pmeg were estimated based on bidirectional BLASTp hits. To be considered as an ortholog, BLASTp should produce an alignment of at least 50% of the sequence E-value less than 1e-10.

^bTranscribed sequence. Genes with >10 reads, either in mycelia, zoospores, or in planta are considered transcribed.

^cTranscribed genes with predicted signal peptide sequence (secretomes).