Table 4.
Gene Ontogeny (GO) Terms Associated with Outlier DArTseq Markers from Three Eucalyptus Species that Colocate on the Eucalyptus grandis Reference Genome (Ver2)
| Marker 1 | Marker 2 | Context | E. grandis Gene | Description | Linkage Group | Gene Start Position | Gene Stop Position | GO Term ID | Description |
|---|---|---|---|---|---|---|---|---|---|
| LoxDArTseq1012 | SalDArTseq 11926 (Sal2) | Near | Eucgr.G00352 | ATP phosphoribosyl-transferase | 7 | 5,749,137 | 5,754,442 | 105 | Histidine biosynthesis process |
| 287 | Magnesium ion binding | ||||||||
| 3,879 | ATP phophoribosyl transferase activity | ||||||||
| 5,737 | Cytoplasm | ||||||||
| TriDArTseq1079 | SalDArTseq 3803 (Sal2) | In | Eucgr.F00208 | Proprotein convertase subtilisin/kexin | 6 | 2,435,562 | 2,438,350 | 4,252 | Serine type endopeptidase activity |
| 42,802 | Identical protein binding | ||||||||
| 43,086 | Negative regulation of catalytic activity | ||||||||
| 6,508 | Proteolysis | ||||||||
| TriDArTseq 1174 | SalDArTseq 9159 (Sal1) | In | Eucgr.A02872 | K13458—disease resistance protein | 1 | 43,795,662 | 43,798,891 | NA |
Note.—“Context” refers to whether markers are located within the same gene (In) or are located within 5,000 bp of (i.e., Near but not In) the same gene.