Table 1. Total reads and mapped reads obtained in each sample analyzed.
| RNA Fraction | Sample number | Breed | Reads (n) | *Mapped reads (n) | % mapped reads |
|---|---|---|---|---|---|
| MGT | 653 | Jersey | 40,147,740 | 24,732,197 | 61.6 |
| 671 | Jersey | 38,508,068 | 23,163,085 | 60.2 | |
| 1816 | Normande | 26,480,391 | 19,732,280 | 74.5 | |
| SC | 653 | Jersey | 40,209,699 | 28,036,287 | 69.7 |
| 671 | Jersey | 39,507,994 | 26,136,100 | 66.2 | |
| LCMEC | 653 | Jersey | 27,335,082 | 17,121,159 | 62.6 |
| 671 | Jersey | 24,355,141 | 14,345,582 | 58.9 | |
| 1816 | Normande | 23,173,807 | 16,973,772 | 73.3 | |
| MFG | 653 | Jersey | 23,918,861 | 14,588,022 | 60.9 |
| 671 | Jersey | 24,334,219 | 14,475,382 | 59.5 | |
| 1816 | Normande | 34,023,717 | 22,407,126 | 65.9 | |
| mMEC | 653 | Jersey | 38,899,626 | 29,284,686 | 75.3 |
| 671 | Jersey | 38,495,029 | 28,292,867 | 73.5 | |
| 1816 | Normande | 29,191,918 | 22,056,958 | 75.6 | |
| Average | 32,041,521 | 21,524,679 | 66.9 |
*Reads categorized as mapped to the annotated UMD3.1 bovine genome assembly (27,368 genes). MGT: mammary gland tissue; SC: milk somatic cells; LCMEC: laser microdissected mammary epithelial cells; MFG: milk fat globules; mMEC: antibody- captured milk mammary epithelial cells.