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. 2017 Jan 30;9(2):415–430. doi: 10.1093/gbe/evx006

Table 1.

Features of the Calopteryx splendens Genome Assembly and Gene Annotation and Comparison to Those of Other Arthropods

CSPLE a ZNEVA b APISU c ISCAP d AALBO e AAEGY f LMIGR g
Estimated genome size (Mbp) 1,670 562 517 2,100 606-1,623 1,317 6,300
Assembly size (Mbp) 1,630 494 464 1,800 1,967 1,384 6,500
Sequencing technology Illumina Illumina Sanger Sanger Illumina Sanger Illumina
Sequencing coverage (x) 65.5 98.4 6.2 3.8 350 7.6 114
Total no of contigs 1,278,437 h 72,844 570,640 607,139 36,206 1,438,086
Contig N50 (kbp) 3.1 20.0 10.8 2.9 17.3 82.6 9.3
Total no of scaffolds 8,896 93,931 23,924 369,495 401,027 4,758 551,270
Scaffold N50 (kbp) 422.3 740.0 88.5 51.5 195.5 1,500.0 320.3
Max scaffold length (kbp) 2,780 5,111 3,073 3,952 1,305 5,856 7,903
Number of genes predicted 22,523 15,876 34,604 20,486 17,539 15,419 17,307
Mean exon length (bp) 193 210 255 855 1,381 h 1,160
Average no of exons/gene 5.0 6.1 4.5 h 3.3 4.0 5.8
BUSCO i (genome) 53.5 (1.7), 31.8, 14.7 75.7 (2.6), 20.8, 3.5 60.5 (6.1), 19.1, 20.4 57.4 (2.6), 28.2, 14.4 83.2 (24), 12.6, 4.2 80.4 (11), 15.7, 3.9 32 (2.8), 36, 30
BUSCO i (gene set) 68.6 (5.9), 21.2, 10.2 94.9 (9.8), 3.9, 1.2 89.9 (14), 4.1, 6 69.4 (6.6), 23.4, 7.2 83 (23), 6.3, 10.7 93.3 (17), 3.6, 3.1 76 (10), 12, 10
a

Abbreviations used for species names; CSPLE, Calopteryx splendens; ZNEVA, Zootermopsis nevadensis; APISU, Acyrthosiphon pisum; ISCAP, Ixodes scapularis; AALBO, Aedes albopictus; AAEGY, Aedes aegypti; LMIGR, Locusta migratoria.

b

Numbers taken from Terrapon et al. (2014).

d

Numbers taken from Gulia-Nuss et al. (2016).

e

Numbers taken from Chen et al. (2015).

f

Numbers taken from Nene et al. (2007).

g

Numbers taken from Wang et al. (2014).

h

Numbers not provided in the corresponding manuscript.

i

BUSCO completeness scores are in the format: % complete BUSCOs (of which, duplicated), % fragmented BUSCOs, % missing BUSCOs.