Table 1.
CSPLE a | ZNEVA b | APISU c | ISCAP d | AALBO e | AAEGY f | LMIGR g | |
---|---|---|---|---|---|---|---|
Estimated genome size (Mbp) | 1,670 | 562 | 517 | 2,100 | 606-1,623 | 1,317 | 6,300 |
Assembly size (Mbp) | 1,630 | 494 | 464 | 1,800 | 1,967 | 1,384 | 6,500 |
Sequencing technology | Illumina | Illumina | Sanger | Sanger | Illumina | Sanger | Illumina |
Sequencing coverage (x) | 65.5 | 98.4 | 6.2 | 3.8 | 350 | 7.6 | 114 |
Total no of contigs | 1,278,437 | – h | 72,844 | 570,640 | 607,139 | 36,206 | 1,438,086 |
Contig N50 (kbp) | 3.1 | 20.0 | 10.8 | 2.9 | 17.3 | 82.6 | 9.3 |
Total no of scaffolds | 8,896 | 93,931 | 23,924 | 369,495 | 401,027 | 4,758 | 551,270 |
Scaffold N50 (kbp) | 422.3 | 740.0 | 88.5 | 51.5 | 195.5 | 1,500.0 | 320.3 |
Max scaffold length (kbp) | 2,780 | 5,111 | 3,073 | 3,952 | 1,305 | 5,856 | 7,903 |
Number of genes predicted | 22,523 | 15,876 | 34,604 | 20,486 | 17,539 | 15,419 | 17,307 |
Mean exon length (bp) | 193 | 210 | 255 | 855 | 1,381 | – h | 1,160 |
Average no of exons/gene | 5.0 | 6.1 | 4.5 | – h | 3.3 | 4.0 | 5.8 |
BUSCO i (genome) | 53.5 (1.7), 31.8, 14.7 | 75.7 (2.6), 20.8, 3.5 | 60.5 (6.1), 19.1, 20.4 | 57.4 (2.6), 28.2, 14.4 | 83.2 (24), 12.6, 4.2 | 80.4 (11), 15.7, 3.9 | 32 (2.8), 36, 30 |
BUSCO i (gene set) | 68.6 (5.9), 21.2, 10.2 | 94.9 (9.8), 3.9, 1.2 | 89.9 (14), 4.1, 6 | 69.4 (6.6), 23.4, 7.2 | 83 (23), 6.3, 10.7 | 93.3 (17), 3.6, 3.1 | 76 (10), 12, 10 |
Abbreviations used for species names; CSPLE, Calopteryx splendens; ZNEVA, Zootermopsis nevadensis; APISU, Acyrthosiphon pisum; ISCAP, Ixodes scapularis; AALBO, Aedes albopictus; AAEGY, Aedes aegypti; LMIGR, Locusta migratoria.
Numbers taken from Terrapon et al. (2014).
Numbers taken from International Aphid Genomics Consortium (2010).
Numbers taken from Gulia-Nuss et al. (2016).
Numbers taken from Chen et al. (2015).
Numbers taken from Nene et al. (2007).
Numbers taken from Wang et al. (2014).
Numbers not provided in the corresponding manuscript.
BUSCO completeness scores are in the format: % complete BUSCOs (of which, duplicated), % fragmented BUSCOs, % missing BUSCOs.