Table 2.
Location of Genes with Sex-Biased Expression
| General Loci | Specific Locus | Number DE | Percentage DE | Expressed Genes |
|---|---|---|---|---|
| Genome | 1384 | 10.3 | 13,414 | |
| Macrochromosomes | 588 | 8.9 | 6595 | |
| 1 | 124 | 8.3 | 1492 | |
| 2 | 148 | 9.8 | 1515 | |
| 3 | 65 | 6.4 | 1009 | |
| 4 | 99 | 9.8 | 1008 | |
| 5 | 91 | 9.9 | 916 | |
| 6 | 61 | 9.3 | 655 | |
| Microchromosomes | 27 | 13.6 | 198 | |
| LGa | 4 | 26.7 | 15 | |
| LGb | 6 | 10.4 | 59 | |
| LGc | 5 | 10.4 | 48 | |
| LGd | 0 | N/A | 0 | |
| LGf | 12 | 17.4 | 69 | |
| LGg | 0 | 0 | 2 | |
| LGh | 0 | 0 | 5 | |
| Contigs | 69 | 11.1 | 622 | |
| All scaffolds | 700 | 11.7 | 5999 | |
| X-linked scaffolds | 17 | 12.5 | 136 | |
| GL343282.1 | 2 | 2.4 | 84 | |
| GL343338.1 | 7 | 10.9 | 64 | |
| GL343417.1 | 4 | 7.3 | 55 | |
| GL343423.1 | 2 | 8.3 | 24 | |
| GL343550.1 | 0 | 0 | 12 | |
| GL343947.1 | 1 | 9.1 | 11 | |
| GL343913.1 | 1 | 12.5 | 8 | |
| GL343364.1 | 0 | 0% | 26 |
Note.—The number and percentage of genes with differential expression (DE) between male and female anoles are shown across the entire genome and for different subsets of the Assembled and unassembled anole genome. Significance was determined for expressed genes with FPKM values of at least 2. Genes were identified as significant by cuffdiff (Trapnell et al. 2012) if they exhibited a multiple testing corrected q-Value less than or equal to 0.05 (cuffdiff output available at https://github.com/WilsonSayresLab/Anole_expression)