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. Author manuscript; available in PMC: 2018 Apr 6.
Published in final edited form as: SAR QSAR Environ Res. 2016 Oct 6;27(10):799–811. doi: 10.1080/1062936X.2016.1238010

Table 2.

Statistical metrics for the QSAR PLS-DA model

CALIBRATION VALIDATION EXTERNAL VALIDATION
CLASS RB NRB RB NRB RB NRB
N 284 553 72 146 479 191
NMISCLASS 34 93 12 19 69 38
ME (%) 11.97 16.81 16.67 13.01 14.405 19.89
TP 0.88028 0.83183 0.8333 0.86986 0.80105 0.85595
FP 0.16817 0.11972 0.13014 0.16667 0.14405 0.19895
TN 0.83183 0.88028 0.86986 0.83333 0.85595 0.80105
FN 0.11972 0.16817 0.16667 0.13014 0.19895 0.14405
SENS 0.880 0.832 0.833 0.870 0.801 0.856
SPEC 0.832 0.880 0.870 0.833 0.856 0.801
R 0.6457 0.6530 0.6063
RMSE 0.361516 0.356293 0.3676

N: number of substances in each class.

Nmisclass: number of misclassifed substances.

ME (%): misclassification error;

TP: true positive;

FP: false positive;

TN: true negative;

FN: false negative;

Sens: sensitivity;

Spec: specificity.

R: Pearson’s correlation coefficient for calibration, validation, and external validation.

RMSE: root mean square error for calibration, validation, and external validation.