Table 2.
Name | Primer Sequence (5′ to 3′)a,b | Used for |
---|---|---|
Up923F1-EcoRI Up923R1-ErmF | CGGAATTCGACGCGTACCλTTCCATT CACAATAGAGAGATGTCACCTGTCGATλGGATTTCGCTTC | Amplification of sequence upstream nos |
Dn923F2-ErmR Dn923R2-BamHI | GGTATACTACTGACAGCTTCCAACAGAAGCTACTGGTTGTCCA CGGGATCCGGTGTGTCTGCTTGGACλ | Amplification of sequence downstream nos |
ErmF-Up923R1 ErmR-Dn923F2 | GAAGCGλTCCTTTATCGACAGGTGACATCTCTCTATTGTG TGGACAACCAGTAGCTTCTGTTGGAAGCTGTCAGTAGTATACC | Amplification of ermB |
Up923F3 Dn923R3 | TCCTGCTCGCACATTACTTG CGTCAGGTATCTTGTTGCTCA | Control of nos::erm construction |
Up923PF5-SalI Dn923R5-EcoRI | ACGCGTCGACGTGCTTGATAGCACATGλAAGGA CGGAATTCGGGTCGTTAATGλTGGACA | Complementation of nos in pRB473 |
Up923PF5-SalI Dn922-EcoRI | ACGCGTCGACGTGCTTGATAGCACATGλAAGGA CGGAATTCTTGCTCATTAGGTTGTGCTAATTC | Complementation of nos-pdt in pRB473 |
Up922-SalI Dn922-EcoRI | ACGCGTCGACGTAAGGGGTAACGTCλTGλ CGGAATTCTTGCTCATTAGGTTGTGCTAATTC | Complementation of pdt in pRB474 |
923F4 922R1 | AAGCGλTCCTTTATCGACAC CTAATGGCAGGCCCAATAGA | Co-transcription nos-pdt |
923F2 923R2 | TGCAGAAGCGTTTGAATTTG GCTTCGATGCAGTGAGATGA | qRT-PCR of nos (SXYL_00923) |
2505F 2505R | CGTCATCTTCACGλGTCATATTC CGCTAGTACACATTATTATCCAATAG | qRT-PCR of katA (SXYL_2505) |
1551F 1551R | ATTCGTGGATTCGCATλAG AGCTTCTGGTAGTGACGT | qRT-PCR of katB (SXYL_1551) |
2533F 2533R | TTCGATCATGAACGTATACCA GTGTCTGGTGAACCTTTAGAG | qRT-PCR of katC (SXYL_2533) |
1303F 1303R | CGCAGCAGTAGAAGGAACTG ATGTCCACCGCCATTATTGC | qRT-PCR of the housekeeping gene sod (SXYL_1303) and control of DNA contamination in RNA extracts |
aUnderlined regions represent restriction enzyme sequences.
bPrimer containing overlapping end (in bold).