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. 2017 Apr 6;8:598. doi: 10.3389/fmicb.2017.00598

Table 2.

Oligonucleotides used in this study.

Name Primer Sequence (5′ to 3′)a,b Used for
Up923F1-EcoRI Up923R1-ErmF CGGAATTCGACGCGTACCλTTCCATT CACAATAGAGAGATGTCACCTGTCGATλGGATTTCGCTTC Amplification of sequence upstream nos
Dn923F2-ErmR Dn923R2-BamHI GGTATACTACTGACAGCTTCCAACAGAAGCTACTGGTTGTCCA CGGGATCCGGTGTGTCTGCTTGGACλ Amplification of sequence downstream nos
ErmF-Up923R1 ErmR-Dn923F2 GAAGCGλTCCTTTATCGACAGGTGACATCTCTCTATTGTG TGGACAACCAGTAGCTTCTGTTGGAAGCTGTCAGTAGTATACC Amplification of ermB
Up923F3 Dn923R3 TCCTGCTCGCACATTACTTG CGTCAGGTATCTTGTTGCTCA Control of nos::erm construction
Up923PF5-SalI Dn923R5-EcoRI ACGCGTCGACGTGCTTGATAGCACATGλAAGGA CGGAATTCGGGTCGTTAATGλTGGACA Complementation of nos in pRB473
Up923PF5-SalI Dn922-EcoRI ACGCGTCGACGTGCTTGATAGCACATGλAAGGA CGGAATTCTTGCTCATTAGGTTGTGCTAATTC Complementation of nos-pdt in pRB473
Up922-SalI Dn922-EcoRI ACGCGTCGACGTAAGGGGTAACGTCλTGλ CGGAATTCTTGCTCATTAGGTTGTGCTAATTC Complementation of pdt in pRB474
923F4 922R1 AAGCGλTCCTTTATCGACAC CTAATGGCAGGCCCAATAGA Co-transcription nos-pdt
923F2 923R2 TGCAGAAGCGTTTGAATTTG GCTTCGATGCAGTGAGATGA qRT-PCR of nos (SXYL_00923)
2505F 2505R CGTCATCTTCACGλGTCATATTC CGCTAGTACACATTATTATCCAATAG qRT-PCR of katA (SXYL_2505)
1551F 1551R ATTCGTGGATTCGCATλAG AGCTTCTGGTAGTGACGT qRT-PCR of katB (SXYL_1551)
2533F 2533R TTCGATCATGAACGTATACCA GTGTCTGGTGAACCTTTAGAG qRT-PCR of katC (SXYL_2533)
1303F 1303R CGCAGCAGTAGAAGGAACTG ATGTCCACCGCCATTATTGC qRT-PCR of the housekeeping gene sod (SXYL_1303) and control of DNA contamination in RNA extracts

aUnderlined regions represent restriction enzyme sequences.

bPrimer containing overlapping end (in bold).