Table 3.
Phenotypes (GR) and frequencies of haplotypes (or alleles) for the three main QTL identified via GWAS using all accessions.
| Main QTL | Haplotpye | Frequency of Hap | GR 2012 Ya’an | GR 2013 Wenjiang | GR 2014 Wenjiang | GR 2014 Chongzhou | GR 2015 Wenjiang | GR 2015 Chongzhou |
|---|---|---|---|---|---|---|---|---|
| QTL1 | Hap-Aa | 60.6% | 38.8% | 15.8% | 9.0% | 12.6% | 10.7% | 17.7% |
| Hap-Gb | 39.4% | 89.5% | 85.2% | 63.9% | 63.8% | 60.9% | 73.4% | |
| QTL2 | Hap-CACTTa | 85.4% | 42.4% | 31.3% | 20.1% | 25.4% | 23.5% | 29.0% |
| Hap-TGTACb | 14.6% | 94.2% | 91.4% | 71.6% | 67.7% | 68.8% | 77.1% | |
| QTL3 | Hap-Aa | 70.8% | 30.1% | 32.5% | 21.7% | 26.2% | 24.0% | 30.1% |
| Hap-Gb | 29.2% | 71.8% | 83.2% | 59.7% | 60.7% | 59.1% | 71.8% |
aFavorable haplotpye, bUnfavorable haplotpye determined by ANOVA test.