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. 2017 Apr 5;18:32. doi: 10.1186/s12863-017-0501-y

Fig. 6.

Fig. 6

Effect of different quality control parameters on the number of GBS markers selected for downstream analysis. The markers identified by GBS and used in the 18 datasets had a genotype quality score ≥ 20 and no more than one alternative allele. More details on the datasets can be found in Table 3. minMAF: minimum minor allele frequency; RD: read depth