Table 3.
Nucleotide and haplotype diversity of four genes in 10 natural populations.
| Candidate gene | HsfA1d | DAR1 | ELF3 | LHY |
|---|---|---|---|---|
| Expected length (bp) | 810 | 539 | 699 | 866 |
| PCR length (bp) | 810 | 664 | 699 | 952 |
| Sequence length (bp) | 654 | 459 | 626 | 849 |
| No. of genotypes | 52 | 51 | 54 | 53 |
| No. of indels | 0 | 0 | 0 | 0 |
| Indel frequency | 0 | 0 | 0 | 0 |
| No. of SNPs | 1 | 1 | 2 | 4 |
| Transition | 0 | 0 | 2 | 3 |
| Transversion | 1 | 1 | 0 | 1 |
| SNP frequency | 1/654 | 1/459 | 1/313 | 1/212 |
| Nucleotide diversity (Pi) | 0.00032 | 0.00046 | 0.00059 | 0.00118 |
| Watterson’s parameter (𝜃w) | 0.00034 | 0.00048 | 0.0007 | 0.0009 |
| No. of haplotypes | 2 | 2 | 3 | 3 |
| Haplotype diversity | 0.208 | 0.212 | 0.352 | 0.312 |