Table 4.
Genetic diversity measures and historical demographic patterns of chickens from Indonesia, South Asia, East Africa and Madagascar. (N(H), size (no. haplotypes); HD, haplotype diversity; ND, nucleotide diversity; π, mean no. of pairwise difference; SSD, sum of squared differences. *Statistically significant p-values (p < 0.05 for Tajima's D, p < 0.02 for Fu's Fs).)
| molecular diversity indices |
neutrality test |
|||||
|---|---|---|---|---|---|---|
| region | N(H) | HD | ND (SD) | π | Tajima's D | Fu's FS |
| haplogroup D and E combined | ||||||
| Indonesia | 583 (115) | 0.95 | 0.0047 (0.0031) | 1.63 | −2.01* | −27.13* |
| South Asia | 409 (114) | 0.91 | 0.0124 (0.0068) | 4.31 | −1.97* | −25.10* |
| Africa | 276 (42) | 0.91 | 0.0123 (0.0068) | 4.30 | −0.03 | −17.36* |
| Madagascar | 79 (10) | 0.43 | 0.0048 (0.0032) | 1.68 | −1.15 | −1.88 |
| D haplogroup only | ||||||
| Indonesia | 551 (102) | 0.95 | 0.0038 (0.0026) | 1.32 | −2.14* | −28.85* |
| South Asia | 100 (40) | 0.92 | 0.0118 (0.0066) | 4.13 | −1.67* | −25.74* |
| Africa | 127 (19) | 0.78 | 0.0041 (0.0028) | 1.41 | −1.50* | −11.94* |
| Madagascar | 67 (6) | 0.22 | 0.0008 (0.0009) | 0.27 | −1.90* | −5.32* |