Table 2. Differentially methylated CpGs in obese children.
| Probes | CHR | UCSC RefGene Name | UCSC RefGene Group | Relation to UCSC CpG Island | Methylation percent in obese children | Methylation percent in control subjects | p.value | q.value |
|---|---|---|---|---|---|---|---|---|
| cg23314826 | 8 | 0.962 ± 0.003 | 0.965 ± 0.003 | 1.31e-08 | 0.003 | |||
| cg11324650 | 3 | Island | 0.449 0.056 | 0.521 0.034 | 4.59e-08 | 0.005 | ||
| cg08468401 | 3 | 0.390 0.070 | 0.501 0.087 | 7.09e-08 | 0.005 | |||
| cg04052934 | 6 | 0.752 0.050 | 0.796 0.052 | 2.29e-07 | 0.012 | |||
| cg06769708 | 20 | DLGAP4 | Body | S_Shore | 0.970 0.007 | 0.976 0.005 | 2.05e-07 | 0.012 |
| cg19835478 | 21 | COL6A1 | TSS1500 | Island | 0.039 0.007 | 0.029 0.006 | 2.78e-07 | 0.013 |
| cg26645655 | 3 | 0.426 0.062 | 0.502 0.071 | 3.23e-07 | 0.013 | |||
| cg00562180 | 16 | N_Shelf | 0.891 0.021 | 0.793 0.110 | 5.87e-07 | 0.018 | ||
| cg07060864 | 16 | 0.604 0.024 | 0.558 0.038 | 6.01e-07 | 0.018 | |||
| cg13844049 | 1 | 0.131 0.018 | 0.166 0.045 | 6.36e-07 | 0.018 | |||
| cg26834418 | 11 | CHORDC1 | TSS1500 | S_Shore | 0.206 0.087 | 0.324 0.095 | 7.21e-07 | 0.019 |
| cg16427670 | 13 | ARHGEF7 | TSS1500 | 0.056 0.007 | 0.046 0.007 | 9.24e-07 | 0.021 | |
| cg16705578 | 3 | Island | 0.019 0.004 | 0.025 0.005 | 9.19e-07 | 0.021 | ||
| cg26138821 | 11 | CHORDC1 | TSS200 | S_Shore | 0.054 0.031 | 0.093 0.031 | 9.61e-07 | 0.021 |
| cg14720024 | 5 | S_Shore | 0.939 0.015 | 0.961 0.010 | 1.09e-06 | 0.023 | ||
| cg00103778 | 20 | N_Shore | 0.202 0.028 | 0.264 0.054 | 1.36e-06 | 0.027 | ||
| cg06686058 | 11 | ADM | 5′UTR;1stExon | N_Shore | 0.039 0.005 | 0.034 0.004 | 1.44e-06 | 0.027 |
| cg08025415 | 19 | TLE2 | Body | N_Shelf | 0.981 0.002 | 0.982 0.002 | 1.48e-06 | 0.027 |
| cg16906712 | 6 | HIST1H2BG;HIST1H2AE | TSS1500;3′UTR;1stExon | S_Shore | 0.019 0.004 | 0.024 0.003 | 1.53e-06 | 0.027 |
| cg23043119 | 5 | STARD4 | TSS1500 | S_Shore | 0.039 0.006 | 0.033 0.005 | 1.61e-06 | 0.027 |
| cg07607077 | 7 | C7orf20 | Body | S_Shore | 0.941 0.009 | 0.950 0.005 | 1.71e-06 | 0.027 |
| cg02399233 | 11 | NADSYN1 | Body | 0.977 0.004 | 0.979 0.003 | 2.23e-06 | 0.032 | |
| cg08515072 | 8 | N_Shore | 0.967 0.005 | 0.971 0.005 | 2.16e-06 | 0.032 | ||
| cg12093371 | 10 | N_Shore | 0.073 0.009 | 0.058 0.010 | 2.16e-06 | 0.032 | ||
| cg06918474 | 5 | MARCH3 | 3′UTR | 0.110 0.031 | 0.084 0.049 | 2.38e-06 | 0.034 | |
| cg16331674 | 22 | Island | 0.843 0.048 | 0.785 0.063 | 2.56e-06 | 0.035 | ||
| cg15991546 | 1 | DPYD | TSS200 | Island | 0.050 0.009 | 0.068 0.013 | 2.82e-06 | 0.036 |
| cg17128312 | 19 | FBXW9 | Body | N_Shore | 0.572 0.028 | 0.537 0.036 | 2.79e-06 | 0.036 |
| cg16334849 | 8 | 0.970 0.004 | 0.973 0.005 | 3.19e-06 | 0.040 | |||
| cg03607644 | 8 | 0.929 0.018 | 0.950 0.014 | 3.88e-06 | 0.045 | |||
| cg24317742 | 1 | 0.958 0.007 | 0.967 0.008 | 4.32e-06 | 0.048 |
Table listing the differentially methylated CpG probes with corresponding UCSC RefGene Name, group and group related to CpG Island, methylation percent in obese and control children, p.values and q.values after cell type estimate adjustments.