Table 4. Annotation of SNPs for each linkage group of tambaqui against the genes from zebrafish genome (ENSEMBL release 84).
| LG | VP | Variants Consequences | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| IN | DW | UP | SY | MI | IT | SP | NC | OT | ||
| 1 | 52 | 13 | 8 | 8 | 6 | 6 | 4 | 2 | 2 | 3 |
| 2 | 46 | 16 | 3 | 5 | 1 | 3 | 6 | 5 | 6 | 1 |
| 3 | 46 | 16 | 4 | 5 | 11 | 5 | 3 | 1 | — | 2 |
| 4 | 41 | 15 | 4 | 3 | 2 | 2 | 7 | — | 6 | 2 |
| 5 | 36 | 12 | 5 | 3 | 4 | 1 | 4 | 2 | 3 | 2 |
| 6 | 56 | 27 | 3 | 6 | 4 | 4 | 7 | 1 | 3 | 1 |
| 7 | 46 | 14 | 7 | 6 | 2 | 5 | 7 | 4 | — | 1 |
| 8 | 61 | 24 | 9 | 3 | 8 | 5 | 4 | 2 | 2 | 3 |
| 9 | 79 | 27 | 13 | 6 | 8 | 11 | 6 | 2 | 3 | 2 |
| 10 | 55 | 16 | 3 | 8 | 4 | 6 | 8 | 3 | 5 | 2 |
| 11 | 33 | 13 | 5 | 4 | 6 | 1 | 3 | — | 1 | 1 |
| 12 | 49 | 22 | 5 | 2 | 3 | 1 | 9 | — | 5 | 1 |
| 13 | 40 | 20 | 9 | 3 | 1 | 3 | 3 | — | 1 | 1 |
| 14 | 24 | 9 | 3 | 1 | 5 | 2 | 1 | — | 2 | — |
| 15 | 69 | 18 | 9 | 7 | 12 | 6 | 11 | — | 2 | 4 |
| 16 | 46 | 12 | 6 | 6 | 8 | 2 | 3 | — | 2 | 6 |
| 17 | 33 | 13 | 5 | 2 | 2 | 3 | 2 | 2 | 3 | 1 |
| 18 | 58 | 20 | 13 | 9 | 5 | 5 | 3 | 1 | 1 | 1 |
| 19 | 53 | 15 | 7 | 7 | 9 | 4 | 4 | 2 | 1 | 3 |
| 20 | 38 | 17 | 2 | 6 | 4 | 2 | 4 | 2 | — | 1 |
| 21 | 47 | 14 | 7 | 5 | 8 | 4 | 4 | 2 | 1 | 2 |
| 22 | 50 | 24 | 7 | 7 | 4 | 2 | 4 | 1 | 2 | 3 |
| 23 | 51 | 24 | 4 | 5 | 5 | 3 | 3 | 4 | 3 | 1 |
| 24 | 49 | 19 | 9 | 6 | 3 | 3 | 7 | — | 1 | — |
| 25 | 20 | 7 | 3 | 3 | 1 | 2 | 2 | — | 2 | — |
| 26 | 25 | 13 | 3 | 3 | — | — | 5 | — | — | 1 |
| 27 | 34 | 11 | 4 | 5 | 7 | 1 | 4 | 1 | 1 | 1 |
| All | 1237 | 450 | 159 | 133 | 136 | 90 | 128 | 36 | 58 | 44 |
LG: linkage group; VP: variants processed; IN: intron variant; DW: downstream gene variant; UP: upstream gene variant; SY: synonymous variant; MI: missense variant IT: intergenic variant; SP: splice region variant; NC: non-coding transcript variant; OT: others variants.