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Quantification of differences in CNA calls from the WES CNA detection tools. For each tool, a the number of genes significantly different compared to SNP arrays and b the overlap of those genes across platforms. c Proportion of all calls that are copy number gains and copy number loss segments called by each WES CNA detection tool. d Lengths of copy number segments detected by each WES CNA detection tool compared to the SynthEx synthetic normal strategy using 100-kb non-overlapping bins
