Table 1.
Class | ASCs | NSCs | ||
---|---|---|---|---|
Number | % | Number | % | |
Total reads | 16816796 | 17474976 | ||
Total mappeda reads | 15729752 | 93.54 | 16415908 | 93.94 |
Total HQ mapped reads | 13005381 | 82.68 | 13137926 | 80.03 |
Promoter (≤1 kb) | 90241 | 0.69 | 84170 | 0.64 |
Promoter (1-2 kb) | 81955 | 0.63 | 79542 | 0.61 |
1st exon | 20000 | 0.15 | 17909 | 0.14 |
Other exons | 458938 | 3.53 | 430799 | 3.28 |
1st intron | 625989 | 4.82 | 610668 | 4.65 |
Other introns | 2953913 | 22.72 | 2887216 | 21.99 |
3′ UTR | 91283 | 0.70 | 87248 | 0.66 |
5′ UTR | 9569 | 0.07 | 9244 | 0.07 |
Distal intergenic regions | 8463689 | 65.10 | 8722453 | 66.43 |
Downstream (≤3 kb) | 204583 | 1.57 | 200206 | 1.52 |
In CpGb islands | 97569 | 0.62 | 79283 | 0.48 |
aReads were mapped by BWA database with the default parameter.
bCpG islands were downloaded from UCSC database.
ASCs: activated Schwann cells; NSCs: normal Schwann cells; HQ: high quality.