TABLE 2.
Homology of FPTHV open reading frames to those of other alphaherpesviruses
| ORF | Strand | Lengtha (codons) | Identity (%)
|
Predicted functionb | ||||
|---|---|---|---|---|---|---|---|---|
| HSV-1 | MDV | VZV | ILTV | LETV | ||||
| UL23 | − | 328 | 29 | 27 | 31 | 30 | Thymidine kinase | |
| UL24 | + | 313 | 31 | 29 | 36 | 31 | Membrane-associated protein | |
| UL25 | + | 557 | 33 | 30 | 28 | 31 | Minor capsid protein; DNA packaging | |
| UL26c | + | 549 | 27 | 30 | 29 | 29 | 33 | Capsid maturation protease |
| UL26.5 | + | 293 | —d | — | — | — | 26 | Virion scaffolding protein |
| UL27 | − | 852 | 29 | 30 | 27 | 31 | 40 | Virion membrane glycoprotein B |
| UL28 | − | 750 | 33 | 33 | 32 | 34 | DNA cleavage and packaging | |
| UL29 | − | 952 | 34 | 29 | 32 | 33 | Single-strand DNA binding protein | |
| UL30 | + | 1,091 | 45 | 43 | 44 | 42 | DNA polymerase catalytic subunit | |
| UL31 | − | 307 | 27 | 29 | 28 | 25 | Nuclear phosphoprotein | |
| UL32 | − | 457 | 29 | 30 | 33 | 29 | DNA cleavage and packaging | |
| UL33 | + | 111 | 38 | 44 | 32 | 45 | DNA cleavage and packaging | |
| UL34 | + | 264 | 25 | 25 | 23 | — | Membrane-associated phosphoprotein | |
| UL35 | + | 121 | — | — | — | — | Basic phosphorylated capsid protein | |
Predicted length of primary sequence, counting from the first ATG codon.
Predicted functions are those published for the homologous HSV-1 ORFs (reviewed in reference 39).
UL26 homology is restricted to the N-terminal 250 predicted amino acid residues.
—, no significant similarity between the predicted amino acid sequences was found by pairwise BLAST. Blank space means comparative sequence data were not available.