. 2017 Apr 10;12(4):e0174992. doi: 10.1371/journal.pone.0174992

Table 3. Number of sequences by dataset and drug exposure.

	D_PRRT	D_PRRT Comp.	D_IN	D_IN Comp.	T_PRRT	T_PRRT Comp.	T_IN	T_IN Comp.	TP	TP Comp.	HIVdbExposure
ABC	7,482	4,560	295	229	1,839	1,028	164	103	163	30	301
AZT	18,542	12,184	441	336	3,895	2,405	222	135	372	68	1,075
d4T	13,335	8,079	259	197	2,956	1,764	141	80	250	31	998
ddC	4,007	2,341	57	45	1,114	750	52	40	71	6	297
ddI	12,113	7,398	227	173	2,725	1,657	123	73	197	23	722
FTC	4,580	3,258	359	266	900	595	162	112	52	8	59
3TC	20,730	13,416	525	394	4,191	2,543	262	151	390	70	0
TDF	9,546	6058	479	356	1,933	1,192	211	130	119	13	219
DLV	118	56	5	2	96	58	26	18	6	1	73
EFV	9,673	6,228	301	238	2,168	1,310	168	110	194	35	400
ETR	255	169	62	51	145	94	70	48	4	3	1
NVP	8,405	5,044	232	178	1,836	1,054	123	74	179	31	508
RPV	5	4	2	1	0	0	0	0	0	0	0
APV	1,240	615	48	37	463	216	41	31	38	3	192
ATV	3,444	2,293	230	166	833	510	131	79	39	6	52
DRV	916	587	152	95	328	200	111	68	16	6	4
FPV	1,028	621	79	58	381	211	52	26	28	5	20
IDV	9,466	5,965	184	150	2,134	1,433	112	84	144	20	737
LPV	8,516	5,293	332	244	2,156	1,315	180	104	142	22	147
NFV	7,540	4,669	137	104	1,698	1,018	101	68	113	17	706
SQV	6,187	3,646	166	125	1,638	951	91	41	136	21	428
TPV	643	345	71	58	246	153	62	39	9	0	5
EVG	10	1	3	2	0	0	0	0	0	0	0
RAL	650	448	223	171	251	156	116	80	7	3	0
Naïve	37,577	37,577	1,917	1,917	2,056	2,056	154	154	3	3	0
Total	61,163	53,098	2,579	2,408	6,641	4,862	444	326	441	84	1,384

The numbers of sequences by drug exposure for the development and test datasets are tabulated above. Columns including the abbreviation Comp. in their headers indicate the numbers of sequences from a certain dataset and with a certain drug exposure whose complete drug exposure history is known. The complete drug exposure history for all sequences from the HIVdbExposure dataset is available.

3TC: lamivudine, ABC: abacavir, AZT: zidovudine, d4T: stavudine, ddC: zalcitabine, ddI: didanosine, FTC: emtricitabine, TDF: tenofovir, DLV: delavirdine, EFV: efavirenz, ETR: etravirine, NVP: nevirapine, RPV: rilpivirine, APV: amprenavir, ATV: atazanavir, DRV: darunavir, FPV: fosamprenavir, IDV: indinavir, LPV: lopinavir, NFV: nelfinavir, SQV: saquinavir, TPV: tipranavir, EVG: elvitegravir, RAL: raltegravir