Table 1.
Contig changes and chromosome sizes and coverage
| Joined Sequences1 | Nucleotide Sequence | Overlap Region | Sequence Length | Chromosome | ||||
|---|---|---|---|---|---|---|---|---|
| 53_17a | 53: 62321-1 17a: 124018-1 |
53: 2139-1 17: 124628 - 121880 |
184,200 | 2 | ||||
| 61_29a | 61: 1- 46797 29a: 124018-1 |
61: 45748 - 46797 29: 124018 -122599 |
169,395 | 5 | ||||
| Split Sequences | Nucleotide Sequence | Sequence Length | Chromosome | |||||
| 13a | 1-209,610 | 209,610 | 5 | |||||
| 13b | 209,611-266,103 | 56,493 | N/A | |||||
| 17a | 1-124,018 | 124,018 | 2 | |||||
| 17b | 124,019-203,025 | 85,161 | 1 | |||||
| 27a | 1-108,674 | 108,674 | 5 | |||||
| 27b | 108,675-148,504 | 39,830 | 1 | |||||
| 29a | 1-123,648 | 123,648 | 5 | |||||
| 29b | 123649-143,621 | 19,972 | N/A | |||||
| Chrom | Size by PFGE(Mb) | Size by Optical Map | Total coverage | Total coverage excluding end gaps | Total internal gaps | Total end gaps | ||
|---|---|---|---|---|---|---|---|---|
| 1 | 1.6 | 1.487 | 90.21% | 93.02% | 103,720 | 41,886 | ||
| 2 | 1.6 | 1.504 | 96.64% | 99.29% | 10,818 | 40,123 | ||
| 3 | 2.3 | 1.944 | 94.18% | 96.68% | 64,935 | 49,032 | ||
| 4 | 3.0 | 2.788 | 94.73% | 95.94% | 112,140 | 33,349 | ||
| 5 | 3.5 | 4.429 | 73.97% | 92.84% | 319,957 | 842,792 | ||
| Total | 12.0 | 12.096 | 87.05% | 94.98% | 611,570 | 1,007,182 | ||
The sequence numbers refer to the numbers of the 306 contigs in the assembly, matching the final three digits of the GenBank/GiardiaDB entries. Thus, sequence 17 would be AACB02000017. The a or b letter suffix is used for contigs that were split into a and b sections by the optical map.