Table 3. Methylation changes in or around genes in response to copy number changes of homeologs.
| Gene | Genome | CS | N7A\T7B | N7A\T7D | N7B\T7A | N7B\T7D | N7D\T7A | N7D\T7B | Dt7AS | Dt7AL | Dt7BS | Dt7BL | Dt7DS |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| WSU101 | U | — | 19 | 19 | 19 | — | 19, 5 | — | 18.5 | 19 | 7.8 | — | 19 |
| WSU102 | A | 12 | — | — | 12 | 1 | 12 | 12 | 5 | — | 12 | 12 | 14 |
| WSU103 | B | 18 | 20 | 18 | — | 2 | 18 | 18 | 12 | 18 | — | 18 | 18 |
| WSU104 | A | 10 | — | — | 10 | — | 10 | 10 | 18 | 8 | 10 | 10 | 10 |
| WSU105 | A | 18 | — | — | 17.8 | 1 | 18 | 18 | — | — | 18 | 18 | 18 |
| WSU107 | U | — | — | 7.8 | 8 | 0 | — | — | 18 | — | — | 7.8 | 7.8 |
| BF291511 | A | 19 | — | — | — | 1 | 17 | 19 | 7.8 | 19 | 19 | 19 | 19 |
| BF202806 | D | 6 | 6 | 10 | 17 | 8 | — | — | — | 6 | 6 | — | — |
| BF202806 | B | 5 | 5 | 5 | 6 | — | 5 | 5 | 6 | 5 | — | 5 | 5 |
| BG274496 | U | — | — | — | — | 1 | — | — | 5 | 19 | 19 | 7.8 | — |
| BE490149 | B | 17 | 12 | 17 | — | 9 | 17 | 17 | — | 17 | — | 17 | 17 |
| BE490149 | U | — | — | — | — | 6 | — | — | 17 | — | — | — | — |
| BE591273 | U | — | — | 7.8 | — | — | 10 | 7.8 | 7.8 | 7.8 | — | — | 7.8 |
| BF474382 | U | — | — | 17.6 | — | — | — | — | — | — | 19 | 19 | 15 |
| RZ476 | U | — | 18, 17.5 | 17.5 | 18 | — | 12 | 17.5 | 10 | 17.5 | — | 10 | — |
“Gene” shows the genes or ESTs that showed a difference in methylation pattern in response to copy number change; “genome” shows the genome, copy of which is showing the methylation difference; nullisomic–tetrasomic and ditelosomic lines are marked using the standard nomenclature. The numbers in the table are the sizes of the fragment bands in approximate kilobases, estimated using the size standard during the gel-blot analysis. CS, Chinese spring.