Table 1. The number of unique p-sites and phosphoproteins identified in the various phosphorylation compendiums and subsets.
Total p-Sites | Total p-Sites Found in PFAM Domains | Highly Confident p-Sites | Highly Confident p-Sites Found in PFAM Domains | Phosphoproteins | Phosphoproteins with Highly Confident p-Sites | |
---|---|---|---|---|---|---|
12UHQ | 9783 | 2059 | 2566 (26%) | 431 | 2374 | 1112 (47%) |
20UHQ (only HTP) | 13,244 | 2625 | 4156 (31%) | 698 | 2587 | 1421 (55%) |
21UHQ (including PG2) | 14,339 | 3036 | 5519 (38%) | 1175 | 2633 | 1557 (59%) |
21UHQ metabolism (including PG2) | 1668 | 527 | 499 | 99 | 412 | 197 |
21UHQ metabolism essential proteins (including PG2) | 339 | 153 | 79 | 34 | 71 | 36 |
p-sites identified in three or more experiments are designated as Highly Confident. 12UHQ refers to the Amoutzias et al. (2012) dataset. 20UHQ (only HTP) refers to the p-sites identified by 20 HTP experiments in Vlastaridis et al. (2017). 21UHQ (including PG2) refers to the p-sites identified by 20 HTP experiments and by PhosphoGrid2 in Vlastaridis et al. (2017). 21UHQ metabolism (including PG2) refers to the p-sites identified by 20 HTP experiments and by PhosphoGrid2 in Vlastaridis et al. (2017) that were in metabolic proteins. 21UHQ metabolism essential proteins (including PG2) refers to p-sites identified by 20 HTP experiments and by PhosphoGrid2 in Vlastaridis et al. (2017) that were in essential metabolic proteins. p-site, phosphorylation site; HTP, high-throughput.