Table 2.
Energy metabolism: those in predicted operons are grouped within horizontal dividing lines.
| Locus | Gene | Predicted function | Fold change (Zn-depleted) | Fold change (Zn-chelated) |
|---|---|---|---|---|
| pden0655 | Nitrite/sulphite reductase | 1.8 | nd | |
| pden1843 | ccoH | FixH family protein | 2.4 | nd |
| pden1844 | ccoG | FixG Fe-S protein | 3.7 | nd |
| pden1845 | ccoP | Cytochrome c oxidase, cbb3-type subunit III | 2.3 | nd |
| pden1846 | ccoQ | Cytochrome c oxidase, cbb3-type subunit IV | 2.4 | nd |
| pden1847 | ccoO | Cytochrome c oxidase, cbb3-type subunit II | 2.5 | nd |
| pden1848 | ccoN | Cytochrome c oxidase, cbb3-type subunit I | 2.7 | nd |
| pden2483 | norB | Nitric oxide reductase subunit B | 3.7 | 3.6 |
| pden2484* | norC | Nitric oxide reductase subunit C | 13.5 | 3.6 |
| pden2487 | nirS | Dissimilatory nitrite reductase, cd1-type | 11.3 | nd |
| pden2880 | F0F1-ATPase subunit | 0.60 | nd | |
| pden4443 | ScoI/SenC copper chaperone (CCO maturation) | 0.46 | 4.1 | |
| pden4444 | Cu(I) binding protein (CCO maturation) | 0.33 | 4.6 |
nd, no differential expression detected.
*
Indicates the presence of a possible Zur motif (see Table 7) in the promoter region.