Table 4.

HIV-1 predictor performances on pol fragment classification

			COMET			REGA			CASTOR
		# of instances	TPR	FPR	F-measure	TPR	FPR	F-measure	TPR	FPR	F-measure
CRFs	HIV1_01_AE	1000	0.989	0.000	0.993	0.007	0.000	0.014	0.956	0.001	0.975
	HIV1_02_AG	1000	0.952	0.002	0.967	0.000	0.000	0.000	0.853	0.005	0.897
	HIV1_06_cpx	698	0.924	0.000	0.958	0.938	0.000	0.965	0.927	0.003	0.943
	HIV1_07_BC	1000	0.977	0.000	0.988	0.988	0.000	0.993	0.982	0.002	0.980
	HIV1_08_BC	399	0.965	0.000	0.981	0.990	0.000	0.994	0.972	0.001	0.970
	HIV1_11_cpx	58	0.828	0.000	0.906	0.690	0.000	0.816	0.897	0.006	0.588
	HIV1_12_BF	222	0.860	0.000	0.925	0.374	0.000	0.544	0.932	0.008	0.807
	Mean		0.928	0.000	0.960	0.570	0.000	0.618	0.931	0.004	0.880
Pure subtypes	HIV1_A	1000	0.966	0.001	0.980	0.968	0.106	0.654	0.891	0.006	0.917
	HIV1_B	1000	0.995	0.001	0.993	0.945	0.000	0.970	0.817	0.007	0.866
	HIV1_C	1000	0.990	0.001	0.991	0.997	0.000	0.997	0.912	0.003	0.942
	HIV1_D	1000	0.938	0.000	0.968	0.911	0.000	0.953	0.892	0.010	0.899
	HIV1_F	1000	0.927	0.000	0.962	0.970	0.000	0.985	0.914	0.003	0.940
	HIV1_G	1000	0.915	0.001	0.952	0.929	0.007	0.931	0.778	0.003	0.860
	Mean		0.955	0.001	0.974	0.953	0.019	0.915	0.867	0.005	0.904

This table contains TPR, FPR and F-measure of COMET, REGA and CASTOR on the prediction of HIV-1 M pure subtypes and CFRs pol fragments. The shown classes belong to the common subtypes sampling. The CASTOR model used in this evaluation is PMSHIV03