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Slices of one example of the anatomical pipeline on one sample image. (A) The raw MPRAGE image, (B) the bias-field corrected MPRAGE, (C) the bias-field corrected MPRAGE in MNI space, (D) the Hammers atlas in anatomical space, (E) a brain mask, and (F) the result from the cortical thickness pipeline, (G–I) gray matter, white matter and cerebro-spinal fluid (tissue segmentations), and (J–L) tissue segmentations in MNI space.
