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. 2005 Jan;49(1):32–39. doi: 10.1128/AAC.49.1.32-39.2005

TABLE 2.

Primers used in the study

Primer Positiona Sequence (5′-3′)b
abc2Fc −309, −288 +GGCAATCGCTTGTGTTTTAGCG
abc2R +1735, +1713 −GTGAATCCCATGATGTTGATACC
abc3Fd +108, +129 +GATTGGCCGCAATGGCCGTGGG
abc3R +1123, +1101 −GGTGAGCCAAAGTGGCTTCGCC
abc3F2 +1349, +1372 +GATGAACCCCTTAATTACTTGG
abc7F −203, −182 +GACGAAAAGAGGGATTCGTGCG
abc7R −11, −32 −CCATAAAGCAAAATTGATGCAG
abc2Fe −309, −288 +GGCAATCGCTTGTGTTTTAGCG
Isa mut −105, −85 −GAATTCTTTAAGCTAATTTC
Mega primer F (OG1) (double stranded)f −309, −85 GGCAATCGCTTGTGTTTTAGCGAATAATTTAAATTTTTATCAGAATGAAAGCAAGGGGCCTTCGTTGACAAATCAGTGAAGAGATGCTAAATTCTAGATAATAAAAGACGAAAAGAGGGATTCGTGCGTTGAAAATTTAAGTTAATTTTTTAGAGAAACTGTATAACTTTGCCTGATTGTAACGGGTGGAGTGTGCGGATTTTCGGAAATTAGCTTAAAGAATTC
Mega primer F (V583) (double stranded)g −309, −85 GGCAATCGCTTGTGTTTTAGCGAATAATTTAAATTTTTATCAGAATGAAAGCAAGGGGCCTTCGTTGACAAATCAGTGAAGAGATGCTAAATTCTAGATAATAAAAGACGAAAAGAGGGATTCGTGCGTTGAAAATTTAAGTTAATTTTTTAGAGAAACTGTATAACTTTGCCTGAATATAACGGGTGGAGTGTGCGGATTTTCGGAAATTAGCTTAAAGAATTC
a

Bases relative to ATG.

b

+, sense primer; −, antisense primer.

c

Primers abc2F and abc2R were used to amplify intact lsa on a 2-kb fragment.

d

Primers abc3F to abc7R are intragenic primers used to confirm the lsa sequence.

e

Primers abc2F and lsa mut were used for site-directed mutagenesis (to generate mega primer).

f

Mega primer F(OG1) and abc2R were used to generate lsaV-M. Boldfaced T and G were targeted in site-directed mutagenesis.

g

Mega primer F(V583) and abc2R were used to generate lsaOG-M. Boldfaced A and A were targeted in site-directed mutagenesis.