Table 1.

Summary of the genomic reads from RKQQC and MCCFC aligned to the SCCL reference genome

Pgt race	RKQQC	MCCFC
Total reads	62,781,618	68,290,518
Aligned reads	46,024,317	28,014,613
Proportion reads mapped	73.31%	41.02%
Mean coverage depth	81.72	49.56
Median coverage depth	78	49
% of genome with no coverage	15.52%	24.24%
% of genome with 5× coverage	77.96%	73.80%
% of genome with ≥10× coverage	75.07%	70.82%