Table 4.

Summary of OrthoMCL protein clustering results

Source	Combined	SCCL	MCCFC	RKQQC	Puccinia triticinia
Number of proteins used for clustering	64,633	15,979	16,716	16,253	15,685
Number of ungrouped proteins (unique proteins)	7,962	2,158	1,365	1,388	3,051
Number of proteins clustered into ortholog/paralog groups	56,671	13,821	15,351	14,865	12,634
Number of ortholog/paralog groups	13,785	11,100	11,067	10,736	7,696
Number of unique (single genome) groups	1,086	141	166	141	638
Number of proteins in unique (single genome) groups	3,228	333	361	315	2,219
Maximum number of proteins/group	260	107	61	69	106
Total number of unique proteins (unique groups + ungrouped proteins)	11,190	2,491	1,726	1,703	5,270