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. 2017 Apr 12;17:260. doi: 10.1186/s12885-017-3244-2

Table 3.

Primer sequences and conditions for pyrosequencing analysis

Gene Primer sequence Primer concentration [nM] Ta [°C] Amplicon length [bp] No. of CpGs analyzed Chromosome, position of sequence to analyze, DNA strand Reference
ESR2 f: 5′ GGAGGTTGAGAGAAATAATTGTTTTTTGA 3′ 400 61 255 9 14,
[49,292-
49,369],
positive strand
in-house [NG_011535.1]
r: 5′ [Btn]ATAAACACACCCACCTTACCTTCTCTA 3′
s: 5′ GAAATAATTGTTTTTTGAAATTTG 3′

f forward primer, r reverse primer, s sequencing primer, [Btn] biotin, T a annealing temperature