Table 1.
Top-40 up-regulated genes in ΔscmR relative to WT determined by RNA-seq analysis
| Locus tag | Fold change | Gene | Joint Genome Institute product name |
| BTH_I2366 | 135.0 | bhcB | Polyketide synthase |
| BTH_I2367 | 123.7 | bhcA | Dihydroaeruginoic acid synthetase |
| BTH_I2365 | 123.1 | bhcC | Polyketide synthase |
| BTH_I2363 | 113.3 | bhcE | Polyketide synthase |
| BTH_I2362 | 98.6 | bhcF | Acyl-CoA dehydrogenase domain protein |
| BTH_I2360 | 95.7 | bhcH | Nonribosomal peptide synthetase, putative |
| BTH_I2361 | 95.2 | bhcG | Phosphotransferase enzyme family protein, putative |
| BTH_I2359 | 91.2 | bhcI | Pyridine nucleotide-disulfide oxidoreductase, class II |
| BTH_I2358 | 64.3 | bhcJ | Lipase/esterase |
| BTH_I2368 | 52.0 | bhcAa | Hypothetical protein |
| BTH_I2357 | 50.8 | bhcK | Thioesterase type II |
| BTH_I2369 | 18.8 | Transcriptional regulator, AraC family domain protein | |
| BTH_II2091 | 17.8 | malD | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, putative |
| BTH_II2089 | 16.2 | malB | Hypothetical protein |
| BTH_I3247 | 16.1 | Aldehyde dehydrogenase family protein | |
| BTH_I2356 | 15.5 | Serine protease, subtilase family | |
| BTH_II2090 | 14.9 | malC | Syringomycin synthesis regulator SyrP, putative |
| BTH_I2480 | 14.7 | Sulfate ABC transporter, periplasmic sulfate-binding protein | |
| BTH_I2450 | 13.9 | Amino acid ABC transporter substrate-binding protein, PAAT family | |
| BTH_I1849 | 13.6 | Two component transcriptional regulator, LuxR family | |
| BTH_II2093 | 13.2 | malF | Polyketide synthase, putative |
| BTH_II1234 | 12.6 | btaL | JamP |
| BTH_II2096 | 12.5 | malI | Long-chain-fatty-acid–CoA ligase, putative |
| BTH_II1236 | 12.0 | btaN | Nonribosomal peptide synthetase, putative |
| BTH_II2092 | 11.8 | malE | Aldehyde dehydrogenase family protein |
| BTH_II2088 | 11.0 | malA | Thiotemplate mechanism natural product synthetase |
| BTH_II2095 | 10.8 | malH | Diaminopimelate decarboxylase, putative |
| BTH_II2097 | 10.6 | malJ | Lipoprotein, putative |
| BTH_II1237 | 10.0 | btaO | Thiotemplate mechanism natural product synthetase |
| BTH_II2099 | 9.7 | malL | AMP-binding domain protein |
| BTH_I0892 | 9.7 | Hypothetical protein | |
| BTH_I0815 | 9.5 | Bacterial protein of unknown function (DUF934) superfamily | |
| BTH_II2098 | 9.2 | malK | Malonyl CoA-acyl carrier protein transacylase |
| BTH_I1051 | 9.0 | Sulfate transporter, putative | |
| BTH_II1240 | 8.9 | btaS | Thioesterase II of alpha/beta hydrolase superfamily |
| BTH_II1238 | 8.5 | btaP | Polyketide synthase |
| BTH_II2094 | 8.5 | malG | Ketol-acid reductoisomerase (EC 1.1.1.86) |
| BTH_II1241 | 7.8 | btaT | Drug resistance transporter, Bcr/CflA family protein, putative |
| BTH_II1239 | 7.8 | btaQ | Acetyltransferase, GNAT family |
| BTH_I0814 | 7.7 | Sulfite reductase (NADPH) beta subunit (EC 1.8.1.2) |