Table 2. Optimized subsets of input markers for all promoter subclasses as derived from the EGF and HRG stimulations-specific PEDAL models.

	Rapid short	Rapid long	Early standard	Late standard	Long	Late
EGF	H3K4me3	H3K27ac	H3K4me3	H3K27ac	CTCF	H3K4me3
	H3K27ac	P300	H3K27ac	P300	POL2	H3K27ac
	P300		POL2	CTCF		POL2
	CTCF			DHS
HRG	P300	H3K27ac	P300	H3K4me3	H3K4me3	H3K4me3
	CTCF	POL2		H3K27ac	CTCF	POL2
	POL2	DHS		P300	POL2	DHS
				POL2	DHS
				DHS