Table 3. Optimized subsets of input markers for all enhancer subclasses as derived from the EGF and HRG stimulations-specific PEDAL models.

	Rapid short	Rapid long	Early standard	Late standard	Long	Late
EGF	P300	H3K4me3	H3K4me3	H3K4me3	CTCF	H3K4me3
	CTCF	H3K27ac	P300	H3K27ac		P300
	POL2	CTCF	DHS	CTCF		CTCF
				DHS		POL2
HRG	H3K27ac	H3K4me3	P300	H3K27ac	CTCF	H3K4me3
	P300	P300	DHS	CTCF		H3K27ac
		CTCF		POL2		CTCF
		POL2		DHS		DHS
		DHS