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. 2016 Oct 24;45(5):2838–2848. doi: 10.1093/nar/gkw973

Figure 3.

Figure 3.

Basic modules of FARNA. There are four basic modules in FARNA. Data Sources: The repository for all TFs, TcoFs, CAGE expression data from different cells/tissues, and transcripts for both miRNA and lncRNA. CAGE data was used to filter out low-expressed ncRNA transcripts, TFs, TcoFs. FARNA Associations: This module considers the association of TFs with TcoFs to RNA transcripts and identifies statistically enriched functions related to RNA transcripts in a cell/tissue-specific manner. FARNA DB: This module indexes all associated function annotation using Elasticsearch platform. FARNA Web Interface: Web interface for users to explore the FARNA annotated function and expression profile of RNA transcripts in different cells/tissues.