Table 2. Basic features of databases that contain annotation of human miRNA or lncRNA transcripts/genes.
Database | miRNA | lncRNA | GO | Pathway | Disease | TF | TcoF | Targets | CoE | CTFA |
---|---|---|---|---|---|---|---|---|---|---|
FARNA | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | - | ✓ | ✓ |
lncRNAdb | - | ✓ | ✓ | ✓ | ✓ | - | - | - | ✓ | - |
LncRNADisease | - | ✓ | - | - | ✓ | - | - | - | - | - |
lncRNA2Function | - | ✓ | ✓ | ✓ | - | - | - | - | ✓ | - |
lncRNAtor* | - | ✓ | ✓ | ✓ | - | - | - | ✓ | ✓ | ✓ |
miRGator v3.0 | ✓ | - | ✓ | ✓ | ✓ | - | - | ✓ | ✓ | - |
miRPath v3.0 | ✓ | - | ✓ | ✓ | - | - | - | ✓ | ✓ | - |
miRò | ✓ | - | ✓ | - | ✓ | - | - | ✓ | - | - |
ChIPBase | ✓ | ✓ | ✓ | ✓ | - | ✓ | - | - | - | - |
FAME | ✓ | - | ✓ | ✓ | - | - | - | ✓ | ✓ | - |
NONCODE 2016 | - | ✓ | ✓ | - | ✓ | - | - | - | ✓ | - |
deepBase v2.0 | ✓ | ✓ | ✓ | ✓ | ✓ | - | - | - | ✓ | - |
This table compares the type of annotation provided by different database. ‘✓’ means presence and ‘-’ means absence. CoE: co-expression; CTFA: cell/tissue-specific function annotation. *: Resource with primary focus on cancer.