Table 2. Basic features of databases that contain annotation of human miRNA or lncRNA transcripts/genes.
| Database | miRNA | lncRNA | GO | Pathway | Disease | TF | TcoF | Targets | CoE | CTFA |
|---|---|---|---|---|---|---|---|---|---|---|
| FARNA | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | - | ✓ | ✓ |
| lncRNAdb | - | ✓ | ✓ | ✓ | ✓ | - | - | - | ✓ | - |
| LncRNADisease | - | ✓ | - | - | ✓ | - | - | - | - | - |
| lncRNA2Function | - | ✓ | ✓ | ✓ | - | - | - | - | ✓ | - |
| lncRNAtor* | - | ✓ | ✓ | ✓ | - | - | - | ✓ | ✓ | ✓ |
| miRGator v3.0 | ✓ | - | ✓ | ✓ | ✓ | - | - | ✓ | ✓ | - |
| miRPath v3.0 | ✓ | - | ✓ | ✓ | - | - | - | ✓ | ✓ | - |
| miRò | ✓ | - | ✓ | - | ✓ | - | - | ✓ | - | - |
| ChIPBase | ✓ | ✓ | ✓ | ✓ | - | ✓ | - | - | - | - |
| FAME | ✓ | - | ✓ | ✓ | - | - | - | ✓ | ✓ | - |
| NONCODE 2016 | - | ✓ | ✓ | - | ✓ | - | - | - | ✓ | - |
| deepBase v2.0 | ✓ | ✓ | ✓ | ✓ | ✓ | - | - | - | ✓ | - |
This table compares the type of annotation provided by different database. ‘✓’ means presence and ‘-’ means absence. CoE: co-expression; CTFA: cell/tissue-specific function annotation. *: Resource with primary focus on cancer.