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. 2016 Oct 19;45(4):e17. doi: 10.1093/nar/gkw953

Figure 2.

Figure 2.

Heatmap of sample-to-sample distances. This heatmap was built using DESeq2 on normalized gene read counts. Strains are clustered by replicate and the analysis separates strains from derived (w501 (USA) and Chicharo (Portugal)) and ancestral (Mayotte and Makindu (Kenya)) areas.