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. 2016 Nov 28;45(5):e34. doi: 10.1093/nar/gkw1086

Table 1. Information about the cell-line samples.

Cell-line Platform/ Library Downloaded from Coverage Tissue Annotation
HCC1143 HiSeq2000/ Paired WGS TCGA 50x Breast ductal 52 years female, Caucasian with STAGE IIA, grade 3 Breast ductal carcinoma Basal A subtype
HCC1143BL HiSeq2000/ Paired WGS TCGA 60x, 30x Blood Paired 60x normal for HCC1143 and independent 30x sample
HCC1954 HiSeq2000/ Paired WGS TCGA 58x Breast ductal 61 years female, Indian with STAGE IIA, grade 3 Breast ductal carcinoma. Basal A subtype, HER2 amplified
HCC1954BL HiSeq2000/ Paired WGS TCGA 71x, 30x Blood Paired 60x normal for HCC1954 and independent 30x sample
HCC1187 HiSeq2000/ Paired WGS Illunima BaseSpace 93x Breast ductal 41 years female, Caucasian with STAGE IIA, grade 3 Breast ductal carcinoma Luminal
HCC1187BL HiSeq2000/ Paired WGS Illunima BaseSpace 49x Blood Paired normal for HCC1187
HCC2218 HiSeq2000/ Paired WGS Illunima BaseSpace 83x Breast ductal 38 years female, Caucasian with STAGE IIIA, grade 3 Breast ductal carcinoma Basal A subtype, HER2 amplified
HCC2218BL HiSeq2000/ Paired WGS Illunima BaseSpace 37x Blood Paired normal for HCC2218