Table 1. RNA-Seq reads mapped.
| HeLa WC | HeLa cyto RNP 1 | HeLa cyto RNP 2 | XPD WC | XPD cyto RNP | HEK293 cyto RNP | Akata cyto RNP | |
|---|---|---|---|---|---|---|---|
| Total Reads | 55.0 M | 99.5 M | 14.8 M | 51.3 M | 42.9 M | 55.5 M | 44.2 M |
| L1 Reads* | 1.5 M (2.7%) | 300 K (0.3%) | 163 K (1.1%) | 1.14 M (2.3%) | 584 K (1.4%) | 694 K (1.3%) | 1.0 M (2.3%) |
| FL-L1 Reads** | 17.1K (.03%) | 2.2 K (.002%) | 815 (.005%) | 9010 (.018%) | 3359 (.007%) | 7376 (.013%) | 9096 (.02%) |
| FL-L1 sense | 10 039 (.018%) | 1619 (.0016%) | 616 (.004%) | 3740 (.007%) | 2214 (.005%) | 6111 (.011%) | 4657 (.01%) |
| FL-L1 antisense | 7020 (.012%) | 536 (.0005%) | 199 (.001%) | 5270 (.01%) | 1145 (.002%) | 1265 (.002%) | 4439 (.01%) |
| Sense/anti*** | 1.43 | 3.02 | 3.11 | 0.71 | 1.93 | 4.8 | 1.05 |
*Percent of total reads that map to the HG19-LINE annotation uniquely.
**Percent of LINE-mapped reads that map to the full-length L1 elements.
***ratio of sense to antisense reads mapped.