Table 2. Read counts to top 5΄ RACE loci and corresponding RNA-Seq counts.

CHR #	position	position	orient.	L1 identity	subfamily	5΄ RACE	RNA-Seq	3΄ reads
22	29059274	29065303	+	ID = FL_L1-5219	‘L1HS’	1433	24	75
13	37724090	37730119	-	ID = FL_L1-4381	‘L1PA2’	318	22	4
7	65751841	65757868	-	ID = FL_L1-2762	‘L1HS’	272	24	22
1	174812365	174818381	-	ID = FL_L1-0291	‘L1PA2’	265	25	31
2	118894577	118900596	-	ID = FL_L1-0602	‘L1PA2’	148	10	0
15	64618860	64624899	+	ID = FL_L1-4738	‘L1PA2’	143	4	4
2	71638605	71644631	-	ID = FL_L1-0521	‘L1HS’	114	0	0
13	39574955	39581012	-	ID = FL_L1-4386	‘L1PA2’	112	100	1
7	49719865	49725896	-	ID = FL_L1-2731	‘L1HS’	110	0	0
12	76713405	76719506	+	ID = FL_L1-4272	‘L1PA3’	105	22	4
2	197770314	197776343	+	ID = FL_L1-0783	‘L1HS’	104	0	2
X	154745678	154751709	-	ID = FL_L1-5789	‘L1HS’	104	0	0
5	89958428	89964454	-	ID = FL_L1-2038	‘L1PA3’	102	30	0
11	24349498	24355547	+	ID = FL_L1-3806	‘L1HS’	102	2	0
7	76357803	76363830	+	ID = FL_L1-2766	‘L1PA3’	101	16	4
4	21161014	21167044	+	ID = FL_L1-1333	‘L1HS’	99	0	0
2	66618263	66624282	+	ID = FL_L1-0513	‘L1PA2’	98	10	0
3	51010569	51016603	-	ID = FL_L1-0946	‘L1PA3’	88	2	2
9	89656798	89662815	+	ID = FL_L1-3444	‘L1PA3’	85	29	5
20	23406746	23412777	+	ID = FL_L1-5141	‘L1HS’	83	0	10
9	85664455	85670484	-	ID = FL_L1-3437	‘L1HS’	80	14	8
12	96709723	96715749	+	ID = FL_L1-4311	‘L1PA2’	78	14	2
20	8575749	8581774	-	ID = FL_L1-5119	‘L1PA2’	75	13	2
2	175269187	175275210	-	ID = FL_L1-0730	‘L1PA2’	72	6	0
5	172829800	172835828	-	ID = FL_L1-2242	‘L1HS’	56	0	0
17	66404265	66410283	-	ID = FL_L1-4940	‘L1PA3’	54	12	2
1	43580199	43586164	-	ID = FL_L1-0029	‘L1MB3’	50	14	0