Table 1. Sequences and labelling of real-time PCR primers and probes.

Target	Primer/probe	Sequence (5’-3’) and labels
IS481	Forward primer	GCCGGATGAACACCCATAAG [19]
	Reverse primer	GCGATCAATTGCTGGACCAT [19]
	Probe	6FAM-CGATTGACCTTCCTACGTC-MGBNFQ [19]
IS1001	Forward primer	AATTGCTGCAAGCCAACCA [19]
	Reverse primer	CCAGAGCCGTTTGAGTTCGT [19]
	Probe	VIC-ACATAGACCGTCAGCAG-MGBNFQ [19]
IS1002	Forward primer	CTAGGTCGAGCCCTTCTTGTTAAC [19]
	Reverse primer	GCGGGCAAGCCACTTGTA [19]
	Probe	HEX-CATCGTCCAGTTCTGTTGCATCACCC-BHQ1 [19]
recA	Forward primer	CGGTTCGCTGGGTCTCG [18]
	Reverse primer	CCCGCGGCAGACCAC [18]
	Probe	6FAM-CATCGCATTGGGCG-MGBNFQ [18]
PhHV	Forward primer	GGGCGAATCACAGATTGAATC [21]
	Reverse primer	GCGGTTCCAAACGTACCAA [21]
	Probe	CY5-TTTTTATGTGTCCGCCACCATCTGGATC-BHQ2 [21]