TABLE 2.

Mean TLR4-independent gene fold changes categorized by function^a

Affymetrix probe ID	Gene symbol	Genbank accession no.	Change (fold) at 4 vs 0 h			Results in C3H/HeJ mice at 4 vs 0 h	Description
			C57BL/6	129/SvJ	C3H/HeN
Transcriptional Factors
161348_r_at	Pdlim1	AV149007	−0.06	−0.09	0.55	2.18	PDZ and Lim domain 1 (elfin)
104155_f_at	Atf3	U19118	0.8	1.74	−0.07	3.54	Activating transcription factor 3
96418_r_at	Hox-2.4	M18399	−0.02	0.22	0.73	1.87	Homeobox (Hox2.4) region
Enzymes
161357_r_at	Gstm2	AV207739	0.05	−0.37	0.62	3	Glutathione S-transferase, mu2
101179_at	DEAD/H	D50494	−0.53	−0.22	−0.16	2.98	Aspartate-glutamate-alanine-aspartate box polypeptide 6
Receptor
101771_r_at	CNR5	AB008180	−0.13	0.17	0.5	3.92	Cadherin-related neural receptor 5
Heat shock
100946_at	Hspab	AF109906	0.43	0.09	−1.98	5.15	Heat shock protein 1B
93875_at	Hspa1a	M12571	−0.23	0.37	−1.79	4.98	Heat shock protein 1A
96254_at	Dnajb1	AB028272	−0.14	0.18	−0.86	2.06	DNA J homolog, subfamily B, member 1
Other
92958_at	NA	AI849135	0.16	−0.21	0.18	1.04	NA
98590_at	SYND4	D89571	0.16	−0.35	0.48	1.13	Ryudocan core protein
96680_at	NA	AI835630	0.6	−0.19	0.51	2.2	NA
162420_r_at	NA	AV290470	−0.16	0.08	0.21	2.28	NA
99849_at	NA	C85523	0.13	0.72	0.77	1.51	NA
96526_at	NA	AW228840	0.14	0.02	0.44	1.55	NA
160169_at	NA	AI851407	0.69	−0.01	0.14	1.96	NA
104046_at	NA	AI854141	0.06	−0.09	0.49	1.42	NA
161348_r_at	NA	AV149007	−0.06	−0.09	0.55	2.18	NA
160949_at	NA	AI848924	0.41	−0.15	0.24	2.12	NA
99162_at	NA	AW122398	0.67	0.3	0.88	2.04	NA
160989_r_at	NA	AA717225	−0.16	−0.81	1.07	2.34	NA
161561_r_at	NA	AV264321	−0.63	0.04	0.31	3.9	NA
160979_at	NA	AW120820	−0.36	−0.11	−0.31	1.5	NA
104343_f_at	NA	AI845798	0.38	0.58	0.38	1.44	NA
102381_at	NA	AA619207	0.56	0.14	0.65	1.49	NA
162496_r_at	NA	AV153195	0.04	0.42	0.55	2.82	NA
161869_s_at	NA	AV265258	−0.09	−0.85	−0.32	1.82	NA
101869_s_at	β-globin	J00413	−0.41	−0.61	−0.87	1.68	β-Globin major gene
AFFX-b-ActinMur/M12481_M_st	β-actin	M12481	−0.14	−0.36	0.06	1.53	Cytoplasmic β-actin
103534_at	β1-globin	V00722	−0.38	−0.63	−0.82	2.23	β-1-globin
102727_at	BDNF	X55573	0.18	−0.07	−0.06	2.22	Brain-derived neurotrophic factor
99500_at	SLC12A2	U13174	0.37	0.09	0.43	1.11	Solute carrier family 12, member 2

^aNA, not applicable.