Table 2.
Alignment statistics of RNA-seq data map to reference genome and gene database
| Map to Genome | Map to Gene | |||
|---|---|---|---|---|
| Reads number | Percentage | Reads number(control) | Percentage | |
| Total Reads | 77,106,888 | 100.00% | 77,106,888 | 100.00% |
| Total Base Pairs | 6,939,619,920 | 100.00% | 6,939,619,920 | 100.00% |
| Total Mapped Reads | 49,161,814 | 63.76% | 57,413,016 | 74.46% |
| perfect match | 33,863,808 | 43.92% | 45,400,239 | 58.88% |
| <=5 bp mismatch | 15,298,006 | 19.84% | 12,012,777 | 15.58% |
| unique match | 45,080,932 | 58.47% | 53,836,128 | 69.82% |
| multi-position match | 4,080,882 | 5.29% | 3,576,888 | 4.64% |
| Total Unmapped Reads | 27,945,074 | 36.24% | 19,693,872 | 25.54% |