Table 7.
DEGs encoding pathogenesis-related proteins and cell wall metabolism enzymes.
| Apple gene modela | Functional annotationsb | Log2FCc |
|---|---|---|
| Pathogenesis-related protein 1-like | ||
| MDP0000202342 | Pathogenesis-related protein 1-like | +5.5 |
| MDP0000144351 | Pathogenesis-related protein 1-like | +3.8 |
|
| ||
| Chitinase family protein | ||
| MDP0000202342 | Chitinase family protein | −3.2 |
| MDP0000144351 | Chitinase family protein | −2.9 |
| MDP0000171646 | Acidic endochitinase SE2-like | −2.6 |
| MDP0000282918 | Acidic mammalian chitinase-like | −2.1 |
|
| ||
| Thaumatin-like protein | ||
| MDP0000916930 | Thaumatin-like protein 1a | +4.9 |
| MDP0000205389 | Thaumatin-like protein 1a | +2.9 |
| MDP0000552328 | Thaumatin-like protein 1a | +2.3 |
| MDP0000218699 | Thaumatin-like protein 1a | +2.1 |
| MDP0000293451 | Thaumatin-like protein 1-like | +2.1 |
| MDP0000124752 | Thaumatin-like protein 1a | −3.3 |
|
| ||
| Glucan endo-1,3-beta-glucosidase | ||
| MDP0000908326 | Glucan endo-1,3-beta-glucosidase 9-like | −2.2 |
| MDP0000231628 | Glucan endo-1,3-beta-glucosidase 4-like | −2.0 |
| MDP0000237685 | Glucan endo-1,3-beta-glucosidase 12-like | −5.8 |
|
| ||
| Pectin esterase inhibitor | ||
| MDP0000188907 | Pectin esterase inhibitor 16 | +3.1 |
| MDP0000161463 | Pectin esterase inhibitor 35 | +3.0 |
| MDP0000299506 | Pectin esterase inhibitor 24 | +2.5 |
| MDP0000611653 | Pectin esterase inhibitor 24 | +2.4 |
| MDP0000299884 | Pectin esterase inhibitor 24 | +2.2 |
| MDP0000503248 | Pectin esterase inhibitor family protein | +3.0 |
|
| ||
| Polygalacturonase | ||
| MDP0000845683 | Polygalacturonase | +2.3 |
| MDP0000845685 | Polygalacturonase | +2.6 |
|
| ||
| Cellulose synthase-like protein | ||
| MDP0000208533 | Cellulose synthase-like protein E2 | +4.1 |
| MDP0000172542 | Cellulose synthase-like protein G3 | +2.4 |
| MDP0000223480 | Cellulose synthase-like protein E1 | −2.1 |
aApple gene model is based on available Malus_x_domestica.v3.0.a1_gene_set at https://www.rosaceae.org. bFunction annotation is based on the blastX search against NR database in GenBank. cVariations of transcript abundance are based on the comparison between B.9 and G.935 and expressed as Log2fold change. + indicated higher transcript level in the root of G.935 over that in B.9; − indicated the opposite.