Table 4. Sequence information.
Marker | (Codon Pos.) | T(U) | C | A | G | A/T | Parsimony informative (PI) sites/Total sites |
% PI sites |
---|---|---|---|---|---|---|---|---|
Folmer | (all sites) | 33,8 | 17,6 | 31,6 | 17 | 65,4 | 213/541 | 39,4 |
CO1B | (all sites) | 36 | 16,7 | 32,3 | 14,9 | 68,3 | 245/508 | 48,2 |
ND1 | (all sites) | 47,3 | 11,3 | 26 | 15,4 | 73,3 | 172/335 | 51,3 |
Folmer | (1st pos.) | 36 | 8,7 | 50,5 | 4,8 | 86,5 | 39/180 | 21,7 |
CO1B | (1st pos.) | 35,2 | 19,9 | 26,5 | 18,4 | 61,7 | 111/169 | 65,7 |
ND1 | (1st pos.) | 57,4 | 4,3 | 27,6 | 10,6 | 85 | 47/112 | 42.0 |
Folmer | (2st pos.) | 21,4 | 17,9 | 29,6 | 31,1 | 51 | 6/180 | 3,3 |
CO1B | (2st pos.) | 39,8 | 17,7 | 32,2 | 10,3 | 72 | 44/170 | 25,9 |
ND1 | (2st pos.) | 37,7 | 13,8 | 27,2 | 21,3 | 64,9 | 25/112 | 22,3 |
Folmer | (3st pos.) | 44 | 26,2 | 14,5 | 15,3 | 58,5 | 168/181 | 92,8 |
CO1B | (3st pos.) | 33 | 12,5 | 38,4 | 16,1 | 71,4 | 90/170 | 52,9 |
ND1 | (3st pos.) | 46,6 | 15,8 | 23,2 | 14,4 | 61 | 100/112 | 89,3 |
The proportion of each base (%) at all sites and at only 1st, 2nd and 3rd codon positions is shown for the three analysed mitochondrial gene partitions. The percentage of Parsimony informative (PI) sites is listed for all sites and for 1st, 2nd and 3rd codon positions separately. The value was determined by dividing the number of PI sites to the total numbers of basepairs (Total sites).