Table 2. List of PCR primers.
Primer Name | primer sequence | Expected fragment size (bp) | Annealing temp. (C°) |
---|---|---|---|
p1F | F: CACCCTTCATGAGGATGAGC | 677, 955 | 61 |
p3/5F | F: CCGCAGGTCTCTTGGAAAC | 513, 669 | 63 |
p4F | F: TGGACCAAAGACAGAGGAGAATC | 606, 762 | 63 |
p9R | R: CCTGCTGCTCTGCGCTTAC | ||
hACTB | F: ATGCAGAAGGAGATCACTGC | 508 | 55 |
R: GTCCTCGGCCACATTGTGAA |
To detect and clone all potential human MRO splice variants, primer pairs were designed based on sequences retrieved from electronic gene databases (NM_031939.3, NM_001127174.1, NM_001127175.1, NM_001127176.1). Specific primer pair combinations (F: Forward primer, R-reverse primer) were used to characterize potential splice variants. Primers p1-Forward (p1F) together with p9-Reverse (p9-R) enabled us to clone the 'MROb' isoforms containing the distal 5’UTR, while primer p3/5-F spanning exons 3/5, skipping exon 4, together with p9-R facilitated the cloning of MROa, MROc and MROd containing the proximal 5’UTR. Primer p4-Forward (p4F) together with p9-R enable the cloning of the coding region. hACTB—Human beta-actin.