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. 2017 Apr 13;12(4):e0174873. doi: 10.1371/journal.pone.0174873

Table 2. List of PCR primers.

Primer Name primer sequence Expected fragment size (bp) Annealing temp. (C°)
p1F F: CACCCTTCATGAGGATGAGC 677, 955 61
p3/5F F: CCGCAGGTCTCTTGGAAAC 513, 669 63
p4F F: TGGACCAAAGACAGAGGAGAATC 606, 762 63
p9R R: CCTGCTGCTCTGCGCTTAC  
hACTB F: ATGCAGAAGGAGATCACTGC 508 55
  R: GTCCTCGGCCACATTGTGAA    

To detect and clone all potential human MRO splice variants, primer pairs were designed based on sequences retrieved from electronic gene databases (NM_031939.3, NM_001127174.1, NM_001127175.1, NM_001127176.1). Specific primer pair combinations (F: Forward primer, R-reverse primer) were used to characterize potential splice variants. Primers p1-Forward (p1F) together with p9-Reverse (p9-R) enabled us to clone the 'MROb' isoforms containing the distal 5’UTR, while primer p3/5-F spanning exons 3/5, skipping exon 4, together with p9-R facilitated the cloning of MROa, MROc and MROd containing the proximal 5’UTR. Primer p4-Forward (p4F) together with p9-R enable the cloning of the coding region. hACTB—Human beta-actin.