Table 2.
Important regulatory connections in Fruit-Coex1 and Leaf-C2 leaf subgraphs, their target annotations, and their target homologues in Arabidopsis thaliana
| Important interactions | Tissue | Target annotation | Homologue |
|---|---|---|---|
| Csi-miR2111 → Cs3g07490 | Leaf | DNA.synthesis/chromatin structure | at1g08260 |
| Csi-miR403.1 → Cs3g01650 | Leaf | Protein.degradation.AAA type | at3g01610 |
| B-deficiency-novel_mir_35 → TR-Cs7g16070 → Cs1g15850 | Leaf | RNA.processing | at4g32850 |
| Csi-miR5054.2 → Cs7g07710 | Leaf | DNA.synthesis/chromatin structure | at4g31210 |
| Csi-miR477a-3p → TF-Cs6g19680 → Cs6g16540 | Leaf | RNA.regulation of transcription.Global transcription factor group | at1g65440 |
| Csi-miR1092.2;novel_mir_99 → Cs7g22180.1 | Fruit | RNA.processing.RNA helicase | at5g47010 |
| Csi-miR162;Csi-miR162-3p.1;miR162;Csi-miR162a → orange1.1t00584.1 | Fruit | RNA.processing.degradation dicer | at1g01040 |
| Csi-miR082;Csi-miRN37;novel_mir_191 → Cs2g17510.1 | Fruit | Protein.degradation.ubiquitin.E3.SCF.FBOX | at1g68050 |
| Csi-miR393a.2 → Cs5g32500.1 | Fruit | Hormone metabolism.auxin.signal transduction | at3g62980 |
| Csi-miR162;Csi-miR162-3p.1;miR162;csi-miR162a → orange1.1t00584.1 ← PK-Cs6g15240.1, TR-Cs7g16070.1 | Fruit | RNA.processing.degradation dicer | at1g01040 |
| Csi-miR1092.2;novel_mir_99 → Cs7g22180.1 ← TF-Cs2g09440.2, TF-Cs1g16290.1, TR-Cs7g16070.1 | Fruit | RNA.processing.RNA helicase | at5g47010 |