Table 1.
FH2 domain sequences used in this study
| Species | Classification | Protein | Identifying # | Group | Common name | Truncated? |
|---|---|---|---|---|---|---|
| S. cerevisiae | Ascomycota | SC Bni1 | NP014128 | Bni1 | ||
| S. ceravisiae | Ascomycota | SC Bnr1 | NP012107 | Bnr1 | ||
| S. pombe | Ascomycota | Sp Cdc12 | Q10059 | Cdc12 | ||
| S. pombe | Ascomycota | Sp For3 | O94532 | For3 | ||
| S. pombe | Ascomycota | Sp Fus1 | Q10719 | Fus1 | ||
| A. gossypii (Eremothecium gossypii) | Ascomycota | Ag 1 | AAS54041 | |||
| A. gossypii (E. gossypii) | Ascomycota | Ag 2 | AAS53672 | |||
| A. gossypii (E. gossypii) | Ascomycota | Ag 3 | AAS54127 | |||
| N. crassa | Ascomycota | Nc | EAA26755.1 | |||
| Aspergillus nidulans | Ascomycota | An | eaa57863.1 | Cytokinesis sepA. | ||
| Saccharomyces castelli | Ascomycota | Scast | aacf01000011.1 | |||
| Kluyveromyces waltii | Ascomycota | Kw | aadm01000174.1 | |||
| Candida albicans | Ascomycota | Ca 1 | contig 6-2433 9980-11230 | |||
| C. albicans | Ascomycota | Ca 2 | contig 6-2516 146417-147655 | |||
| Encephalitozoon cuniculi | Microsporida | Ec | pfam q8sux7 | |||
| Ustilago maydis | Basidomycota | Um 1 | aacp01000040.1 | |||
| Ustilago maydis | Basidomycota | Um 2 | aacp01000148.1 | |||
| Phanerochaete chrysosporium | Basidomycota | Pc | JGI 153:13551-13637 | |||
| D. melanogaster | Insecta | Dm 1 | AAF45601 | DAAM | ||
| D. melanogaster | Insecta | Dm 2 | AAO39658 | FRL | ||
| D. melanogaster | Insecta | Dm Dia | T13170 | Dia | Diaphanous | |
| D. melanogaster | Insecta | Dm Cappu | NP722951 | FMN | Cappuccino | |
| D. melanogaster | Insecta | Dm 6 | NP729410 | FHOD | ||
| D. melanogaster | Insecta | Dm 7 | BAC76439 | INF | ||
| A. thalinia | Plant | At 14 | TIGR 68069.t00042 | AT group 1 | ||
| A. thalinia | Plant | At 16 | TIGR 67601.t00020 | AT group 1 | ||
| A. thalinia | Plant | At 18 | TIGR 51105.t00023 | AT group 1 | ||
| A. thalinia | Plant | At 1 | gi6503010 | AT group 2 | ||
| A. thalinia | Plant | At 5 | TIGR 67856.t00014 | AT group 2 | ||
| A. thalinia | Plant | At 8 | TIGR 50885.00033 | AT group 2 | ||
| A. thalinia | Plant | At 2 | TIGR 5256.t00032 | AT group 2 | ||
| A. thalinia | Plant | At 3 | TIGR 68154.t01289 | AT group 2 | ||
| A. thalinia | Plant | At 4 | TIGR 50826.t00057 | AT group 2 | ||
| A. thalinia | Plant | At 6 | TIGR 67936.t00019 | AT group 2 | ||
| A. thalinia | Plant | At 7 | TIGR 51305.t00047 | AT group 2 | ||
| A. thalinia | Plant | At 11 | TIGR 60210.t00017 | AT group 2 | ||
| A. thalinia | Plant | At 19 | TIGR 67601.t00022 | AT group 1 | ||
| A. thalinia | Plant | At 21 | pfam q9lvn1 | AT group 1 | ||
| A. thalinia | Plant | At 22 | pfam q95rr2 | AT group 1 | ||
| A. thalinia | Plant | At 23 | pfam q9lk78 | AT group 1 | C-term | |
| Chlamydomonas reinhardtii | Cr | scaffold 177: 49636 | ||||
| Dictyostelium discoideum | Dictyosteliida | Dd 3 | BAC16796 | FHPA | ||
| D. discoideum | Dictyosteliida | Dd4 | AAO51197 | |||
| D. discoideum | Dictyosteliida | Dd 2 | bac16797 | FHPB | ||
| D. discoideum | Dictyosteliida | Dd 1 | bac16798 | FHPC | ||
| Entamoeba histolytica | Entamoebidae | Eh | pfam q9ngx1 | |||
| Plasmodium falciparum | Apicomplexa | Pf 1 | NP703650 | |||
| P. falciparum | Apicomplexa | Pf 2 | NP701549 | |||
| Thalassiosira pseudonana | Diatoms | Tp 1 | JGI 7:112780-112944 | N-term | ||
| T. pseudonana | Diatoms | Tp 2 | JGI 124:5788-6027 | |||
| T. pseudonana | Diatoms | Tp 3 | JGI 131:10761-10970 | C-term | ||
| C. elegans | Nematoda | Ce 5 | NP503132 | DAAM | ||
| C. elegans | Nematoda | Ce 3 | NP497505 | FRL | ||
| C. elegans | Nematoda | Ce 6 | NP741210 | Dia | CYK1 (LET-794) | |
| C. elegans | Nematoda | Ce 1 | NP740839 | FHOD | ||
| C. elegans | Nematoda | Ce 2 | NP497334 | INF | ||
| C. elegans | Nematoda | Ce 7 | pfam Q19479 | |||
| Gallus gallus | Chordata | Gg 2 | BAB20321 | Dia | ||
| G. gallus | Chordata | Gg 1 | A41724 | FMN | ||
| Danio rerio | Chordata | Dr | CAE49895 | Delphilin | ||
| Mouse* | Chordata | Mm FRL1 | AF215666 (np005883) | FRL | FRL1 | |
| Mouse* | Chordata | Mm FRL2 | XM_128263 (np443137) | FRL | FRL2 | |
| Mouse* | Chordata | Mm FMN2 | NP_062318 (xp371352) | FMN | Formin 2 | |
| Mouse* | Chordata | Mm mDia2 | NP_062644 (Q9NSV4) | Dia | mDia2 | |
| Mouse* | Chordata | Mm FMN1 | NP_034360 (bac86815) | FMN | Formin 1 | |
| Mouse* | Chordata | Mm mDia1 | NM_007858 (o60610) | Dia | mDia1 | |
| Mouse* | Chordata | Mm Delphilin | NP_579933 (xp294249) | delphilin | delphilin | |
| Mouse* | Chordata | Mm INF1 | XP_130991 (xp034262) | INF | INF1 | |
| Mouse* | Chordata | Mm FHOD1 | bac27106 (aao38757) | FHOD | FHOD1 | |
| Mouse* | Chordata | Mm mDia3 | bac40476 (o60879) | Dia | mDia3 | |
| Mouse* | Chordata | Mm DAAM1 | aar05118 (np055807) | DAAM | DAAM1 | |
| Mouse* | Chordata | Mm DAAM2 | aar05119 (np056160) | DAAM | DAAM2 | |
| Mouse* | Chordata | Mm FHOD2 | bac98303 (xp371114) | FHOD | FHOD2 | |
| Mouse* | Chordata | Mm FRL3 | XP_288949 (np783863) | FRL | FRL3 | |
| Mouse* | Chordata | Mm INF2 | NP_940803 (bc008756) | INF | INF2 | |
| Ciona intestinalis | Chordata | Ci 1 | JGI 326:24696-24956 | Dia | ||
| C. intestinalis | Chordata | Ci 2 | JGI 120:50920-51075 | Delphilin | ||
| C. intestinalis | Chordata | Ci 3 | JGI 304:93803-93898 | DAAM | N-term | |
| C. intestinalis | Chordata | Ci 4 | JGI 76:144416-144649 | FRL | ||
| C. intestinalis | Chordata | Ci 5 | JGI 651:21893-22057 | INF | ||
| C. intestinalis | Chordata | Ci 6 | JGI 67:139721-139945 | INF | ||
| C. intestinalis | Chordata | Ci 8 | JGI 1968:1960-2043 | FMN | C-term | |
| C. intestinalis | Chordata | Ci 9 | JGI 20:174173-174244 | FMN | N-term | |
| Takifugu rubripes | Chordata | Tr 1 | JGI 93:130960-131265 | FRL | ||
| T. rubripes | Chordata | Tr 2 | JGI 834:39453-39698 | FRL | ||
| T. rubripes | Chordata | Tr 3 | JGI 1434:78301-78504 | FRL | ||
| T. rubripes | Chordata | Tr 5 | JGI 548:116536-116655 | DAAM | ||
| T. rubripes | Chordata | Tr 6 | JGI 51:230037-230282 | FRL | ||
| T. rubripes | Chordata | Tr 15 | JGI 562:118846-119067 | Delphilin | ||
| T. rubripes | Chordata | Tr 16 | JGI 170:265901-266107 | Delphilin | ||
| T. rubripes | Chordata | Tr 18 | JGI 1675:38617-38718 | INF | ||
| T. rubripes | Chordata | Tr 19 | JGI 22:165389-165493 | INF | ||
| T. rubripes | Chordata | Tr 20 | JGI 153:261105-261212 | INF | ||
| T. rubripes | Chordata | Tr 21 | JGI 795:17295-17477 | FHOD | ||
| T. rubripes | Chordata | Tr 22 | JGI 340:221413-221607 | FHOD | ||
| T. rubripes | Chordata | Tr 23 | JGI 237:221413-221607 | FHOD | ||
| Trypanosome | Kinetoplastida | Tb 1 | TIGR 5691 12c12 | |||
| Trypanosome | Kinetoplastida | Tb 2 | TIGR 5693 1047053511755 | |||
| Trypanosome | Kinetoplastida | Tb 3 | TIGR 5693 1047053508641 | |||
| Leishmania major | Kinetoplastida | Lm 1 | Sanger 5664 LM16.2 contig 192 |
Truncated? refers to whether the sequence is missing either a portion of the N or C terminus. In cases where truncated sequences are analyzed, we strongly suspect that the reason lies in the database and not the fact that the putative protein is missing this portion of its FH2 domain.
*
Human accession numbers given in parentheses