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. 2017 Apr 14;12(4):e0174953. doi: 10.1371/journal.pone.0174953

Fig 3. Block-based RMSD analysis of the native protein-DNA complex.

Fig 3

Color scheme: run 1 (orange), run 2 (violet), and run 3 (cyan). For triplicate runs, trajectory files between 40ns and 50ns were used to elucidate the pattern with the greatest convergence. Trajectory run 2 (violet) shows the best convergence pattern.