Table 2.
The information of five selected SNPs.
| Gene | SNP | Chromosome | Position | Function class | Allele | MAF in CHB | MAF | P c for HWE | Call rate |
|---|---|---|---|---|---|---|---|---|---|
| (dbSNP) | (%) | ||||||||
| TNFSF4 | rs2205960 | 1 | 173222336 | NA | G > T | 0.198 | 0.265 | 0.655 | 100 |
| TNFSF4 | rs844644 | 1 | 173240356 | Intron | A > C | 0.384 | 0.445 | NS | 99.96 |
| TNFSF4 | rs844648 | 1 | 173254724 | Intron | G > A | 0.384 | 0.453 | NS | 100 |
| ANKRD55 | rs6859219 | 5 | 56142753 | Intron | C > A | 0.012 | 0.005 | NS | 100 |
| ANKRD55 | rs7731626 | 5 | 56148856 | Intron | G > A | NA | 0.089 | NS | 100 |
The information was gathered from dbSNP database in NCBI. SNPs = single nucleotide polymorphisms; MAF = minor allele frequency; CHB = Han Chinese in Beijing, China; Pc = P value corrected by Bonferroni method; HWE = Hardy-Weinberg equilibrium; NA = not available; NS = not significant.