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HSV-1 recombination analysis. Recombination analysis using Bootscan and SimPlot. Panels A and B illustrate the bootscan and SimPlot analysis using Indian HSV-1 strain 0116209 as the query sequence. Bootscan plots demonstrate highly fragmented genomes as a result of recombination. Similarity plots demonstrate the sequence similarity between the Indian HSV-1 0116209 as query sequence and the other Asian strains sequences.
