Table 3.

Sequence read report resolved by RNA category for FUS PAR-CLIP shown in Table 2. Reads mapping at d0, d1, or d2 were combined. The output was limited to categories collecting at least 0.2% of total mapped reads to either mature or its precursor. The predominant RNA category was identified by reads mapped to mRNA precursors.

read length	mRNA prec.	mRNA	lincRNA prec.	lincRNA	rRNA prec.	rRNA	tRNA prec	tRNA	piRNA	snRNA	snoRNA prec	snoRNA	…	genome	mito- genome
5	0	0	0	0	0	0	0	0	0	0	0	0	…	0	0
6	0	0	0	0	0	22	0	6	0	0	0	0	…	0	0
7	0	0	0	0	0	622	0	123	0	22	0	122	…	0	0
8	0	251	0	0	0	1021	0	645	0	369	0	1909	…	0	7
9	0	5413	0	0	0	850	0	513	0	483	0	2958	…	0	5
10	0	20817	0	0	0	447	0	196	0	373	0	2099	…	0	5
11	70	49509	0	0	0	401	0	177	0	218	0	954	…	18	16
12	2168	87447	5	0	0	319	0	52	0	131	0	399	…	69	41
13	16260	119065	89	0	0	453	0	51	0	242	0	283	…	297	31
14	72981	106431	429	0	1	588	0	52	5	135	0	129	…	2209	31
15	161328	78318	2982	0	0	967	0	69	30	295	0	38	…	11210	35
16	209364	75440	11227	20	0	2084	9	157	113	132	0	37	…	49091	35
17	219368	89037	18888	106	7	6212	9	214	160	248	21	154	…	79863	98
18	277552	101040	22479	266	54	10079	39	412	202	100	0	83	…	77255	241
19	321390	99934	21397	296	47	111973	0	664	185	567	0	32	…	83540	261
20	327630	94772	16591	969	77	56691	98	1044	135	652	10	321	…	98714	1120
21	302580	79640	15268	510	134	75535	65	1291	362	730	6	989	…	97805	1586
22	244244	61482	13032	564	128	107694	30	901	166	532	0	1934	…	82853	1207
23	187956	49314	8605	598	68	79955	9	710	188	492	27	955	…	63810	1699
24	145668	42179	6932	850	64	72520	15	619	152	3416	18	216	…	50525	1276
25	119643	35339	4805	185	507	99529	14	478	37	710	19	344	…	39592	1114
26	98381	27715	3963	81	34	84078	14	397	24	1715	0	439	…	30319	1947
27	77976	23088	2620	399	81	82730	0	438	81	6993	0	269	…	24390	4226
28	59255	17875	2388	329	35	96331	30	109	35	222	0	353	…	20045	1238
29	51153	13419	1950	515	26	42993	17	484	13	164	0	397	…	16067	590
30	41373	12382	1658	46	58	45796	36	476	0	316	0	336	…	13692	711
31	35080	9679	1203	180	23	100141	0	773	36	170	0	367	…	12290	702
32	30478	9282	1238	122	46	63864	0	1086	2	263	0	185	…	9801	851
33	28231	9160	1035	108	52	116126	0	2429	6	370	0	827	…	9111	1077
34	0	0	0	0	0	0	0	0	0	0	0	0	…	0	0
35	0	0	0	0	0	0	0	0	0	0	0	0	…	0	0
36	61884	17354	3801	165	213	112332	12	278	34	3421	1	859	…	20016	4770
sum:	3092013	1335382	162585	6309	1655	1372353	397	14844	1966	23481	102	17988	…	892582	24920
% annotated:	40.96%	17.69%	2.15%	0.08%	0.02%	18.18%	0.01%	0.20%	0.03%	0.31%	0.00%	0.24%	…	11.82%	0.33%